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CLC Genomics Workbench 10

Organism name:
Pseudomonas aeruginosa (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: BCW_7428
BioSample:
SAMN10686911
BioProject:
PRJNA203445
Submitter:
University of California at Davis
Date:
2020/01/22
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_009916345.1 (latest)
RefSeq assembly accession:
GCF_009916345.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
SDSO01
Assembly method:
De novo v. 10.0.1
Expected final version:
yes
Genome coverage:
106x
Sequencing technology:
Illumina X Ten

IDs: 5489611 [UID] 15885918 [GenBank] 15954728 [RefSeq]

See Genome Information for Pseudomonas aeruginosa

There are 30231 assemblies for this organism

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History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::01/29/2019 21:52:11
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::4.7
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::6,286
CDSs (total)::6,225
Genes (coding)::6,154
CDSs (with protein)::6,154
Genes (RNA)::61
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::53
ncRNAs::5
Pseudo Genes (total)::71
CDSs (without protein)::71
Pseudo Genes (ambiguous residues)::0 of 71
Pseudo Genes (frameshifted)::29 of 71
Pseudo Genes (incomplete)::39 of 71
Pseudo Genes (internal stop)::9 of 71
Pseudo Genes (multiple problems)::6 of 71
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length6,480,468
Total ungapped length6,480,468
Number of contigs144
Contig N50140,006
Contig L5014
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)144

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced6,480,4681446,480,468140,00600

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Pseudomonas aeruginosaPseudomonas aeruginosa

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_022496575.1Pseudomonas aeruginosatype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_022496575.1Pseudomonas aeruginosatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.4993.4197.49
Best-match type99.4993.4197.49

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna