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ASM1104031v1

Organism name:
Thermococcus sp. (euryarchaeotes)
Taxonomy check:
OK
Isolate:
HyVt-236
BioSample:
SAMN09638413
BioProject:
PRJNA480137
Submitter:
The University of Hong Kong
Date:
2020/02/28
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Excluded from RefSeq:
  • derived from metagenome
GenBank assembly accession:
GCA_011040315.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
DRBV01
Assembly method:
MEGAHIT v. 1.1.2
Expected final version:
yes
Genome coverage:
8.39x
Sequencing technology:
Illumina HiSeq 2500

IDs: 6086381 [UID] 17293858 [GenBank]

See Genome Information for Thermococcus sp.

There are 96 assemblies for this organism

See more

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::02/25/2019 15:51:00
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::4.7
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::1,963
CDSs (total)::1,918
Genes (coding)::1,865
CDSs (with protein)::1,865
Genes (RNA)::45
rRNAs::1, 2, 1 (5S, 16S, 23S)
complete rRNAs::1 (5S)
partial rRNAs::2, 1 (16S, 23S)
tRNAs::37
ncRNAs::4
Pseudo Genes (total)::53
CDSs (without protein)::53
Pseudo Genes (ambiguous residues)::0 of 53
Pseudo Genes (frameshifted)::26 of 53
Pseudo Genes (incomplete)::28 of 53
Pseudo Genes (internal stop)::11 of 53
Pseudo Genes (multiple problems)::11 of 53
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length1,603,735
Total ungapped length1,603,735
Number of contigs332
Contig N505,096
Contig L50106
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)332

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced1,603,7353321,603,7355,09600

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Thermococcus sp.Thermococcus sp.

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000022545.1Thermococcus sibiricustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type92.3431.0026.93

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna