U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



ASM1104157v1

Organism name:
Candidatus Atribacteria bacterium (bacteria)
Taxonomy check:
Inconclusive
Isolate:
HyVt-22
BioSample:
SAMN09638395
BioProject:
PRJNA480137
Submitter:
The University of Hong Kong
Date:
2020/02/29
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Excluded from RefSeq:
  • derived from metagenome
  • genus undefined
GenBank assembly accession:
GCA_011041575.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
DRBD01
Assembly method:
MEGAHIT v. 1.1.2
Expected final version:
yes
Genome coverage:
17.77x
Sequencing technology:
Illumina HiSeq 2500

IDs: 6087031 [UID] 17295158 [GenBank]

See Genome Information for Candidatus Atribacteria bacterium

There are 97 assemblies for this organism

See more

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::02/25/2019 16:22:13
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::4.7
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::2,826
CDSs (total)::2,778
Genes (coding)::2,746
CDSs (with protein)::2,746
Genes (RNA)::48
tRNAs::43
ncRNAs::5
Pseudo Genes (total)::32
CDSs (without protein)::32
Pseudo Genes (ambiguous residues)::0 of 32
Pseudo Genes (frameshifted)::10 of 32
Pseudo Genes (incomplete)::19 of 32
Pseudo Genes (internal stop)::9 of 32
Pseudo Genes (multiple problems)::5 of 32
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,778,263
Total ungapped length2,778,263
Number of contigs540
Contig N505,129
Contig L50150
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)540

Supplemental Content

PubMed articles for this assembly

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,778,2635402,778,2635,12900

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Candidatus Atribacteria bacteriumCandidatus Atribacteria bacterium

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_029259515.1Candidatus Thermodesulfobacterium syntrophicumsuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type95.760.340.57

ANI result

Taxonomy check statusBest match statusComment
Inconclusivelow-coveragena