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Source database (GenBank or RefSeq) File type

ASM1104270v1

Organism name:

candidate division WOR-3 bacterium (bacteria)

Taxonomy check:

Inconclusive

Isolate:

HyVt-237

BioSample:

SAMN09638414

BioProject:

PRJNA480137

Submitter:

The University of Hong Kong

Date:

2020/02/29

Assembly type:

Assembly level:

Contig

Genome representation:

full

Excluded from RefSeq:

derived from metagenome
genus undefined

GenBank assembly accession:

GCA_011042705.1 (latest)

RefSeq assembly accession:

n/a

RefSeq assembly and GenBank assembly identical:

n/a

WGS Project:

DRBW01

Assembly method:

MEGAHIT v. 1.1.2

Expected final version:

yes

Genome coverage:

7.99x

Sequencing technology:

Illumina HiSeq 2500

IDs: 6087591 [UID] 17296278 [GenBank]

See Genome Information for candidate division WOR-3 bacterium

Pathogen Detection Resources

There are 191 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_011042705.1	n/a	n/a	ASM1104270v1	Contig	Latest GenBank

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI
Annotation Date::02/25/2019 16:03:34
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::4.7
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::1,423
CDSs (total)::1,393
Genes (coding)::1,385
CDSs (with protein)::1,385
Genes (RNA)::30
rRNAs::1, 1 (5S, 23S)
complete rRNAs::1 (5S)
partial rRNAs::1 (23S)
tRNAs::27
ncRNAs::1
Pseudo Genes (total)::8
CDSs (without protein)::8
Pseudo Genes (ambiguous residues)::0 of 8
Pseudo Genes (frameshifted)::3 of 8
Pseudo Genes (incomplete)::4 of 8
Pseudo Genes (internal stop)::1 of 8
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	1,400,283
Total ungapped length	1,400,283
Number of contigs	259
Contig N50	5,851
Contig L50	78
Total number of chromosomes and plasmids	0
Number of component sequences (WGS or clone)	259

	ANI	Query coverage	Subject coverage
Declared type	na	na	na
Best-match type	na	0.00	0.00

Assembly

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ASM1104270v1

See Genome Information for candidate division WOR-3 bacterium

Pathogen Detection Resources

There are 191 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

Global statistics

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Assembly Information

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Declared organism

Best-matching type-strain assembly for declared species

Best-matching type-strain assembly

Average Nucleotide Identity (ANI) data

ANI result