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ASM1105036v1

Organism name:
Pseudohongiella sp. (g-proteobacteria)
Taxonomy check:
OK
Isolate:
HyVt-330
BioSample:
SAMN09638518
BioProject:
PRJNA480137
Submitter:
The University of Hong Kong
Date:
2020/03/02
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Excluded from RefSeq:
  • derived from metagenome
GenBank assembly accession:
GCA_011050365.1 (latest)
RefSeq assembly accession:
GCF_011050365.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
DRFV01
Assembly method:
MEGAHIT v. 1.1.2
Expected final version:
yes
Genome coverage:
4.85x
Sequencing technology:
Illumina HiSeq 2500

IDs: 6091371 [UID] 17331228 [GenBank] 44898658 [RefSeq]

See Genome Information for Pseudohongiella sp.

There are 22 assemblies for this organism

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History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::02/25/2019 20:10:59
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::4.7
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::3,191
CDSs (total)::3,149
Genes (coding)::3,123
CDSs (with protein)::3,123
Genes (RNA)::42
rRNAs::2 (5S)
partial rRNAs::2 (5S)
tRNAs::36
ncRNAs::4
Pseudo Genes (total)::26
CDSs (without protein)::26
Pseudo Genes (ambiguous residues)::0 of 26
Pseudo Genes (frameshifted)::6 of 26
Pseudo Genes (incomplete)::20 of 26
Pseudo Genes (internal stop)::2 of 26
Pseudo Genes (multiple problems)::2 of 26
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,632,751
Total ungapped length3,632,751
Number of contigs17
Contig N50296,585
Contig L506
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)17

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,632,751173,632,751296,58500

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Pseudohongiella sp.Pseudohongiella sp.

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001758195.1Pseudohongiella acticolatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type82.1035.2735.47

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna