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Source database (GenBank or RefSeq) File type

ASM1105041v1

Organism name:

Halomonas sp. (g-proteobacteria)

Taxonomy check:

Inconclusive

Isolate:

HyVt-328

BioSample:

SAMN09638515

BioProject:

PRJNA480137

Submitter:

The University of Hong Kong

Date:

2020/03/02

Assembly type:

Assembly level:

Contig

Genome representation:

full

Excluded from RefSeq:

derived from metagenome

GenBank assembly accession:

GCA_011050415.1 (latest)

RefSeq assembly accession:

GCF_011050415.1 (suppressed)

RefSeq assembly and GenBank assembly identical:

yes

WGS Project:

DRFS01

Assembly method:

MEGAHIT v. 1.1.2

Expected final version:

yes

Genome coverage:

47.31x

Sequencing technology:

Illumina HiSeq 2500

IDs: 6091381 [UID] 17331278 [GenBank] 44842458 [RefSeq]

See Genome Information for Halomonas sp.

Pathogen Detection Resources

There are 86 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_011050415.1	=	GCF_011050415.1	ASM1105041v1	Contig	Latest GenBank, RefSeq suppressed

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI
Annotation Date::02/25/2019 20:19:13
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::4.7
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::4,395
CDSs (total)::4,326
Genes (coding)::4,231
CDSs (with protein)::4,231
Genes (RNA)::69
rRNAs::6, 2 (5S, 23S)
complete rRNAs::4 (5S)
partial rRNAs::2, 2 (5S, 23S)
tRNAs::56
ncRNAs::5
Pseudo Genes (total)::95
CDSs (without protein)::95
Pseudo Genes (ambiguous residues)::0 of 95
Pseudo Genes (frameshifted)::34 of 95
Pseudo Genes (incomplete)::55 of 95
Pseudo Genes (internal stop)::28 of 95
Pseudo Genes (multiple problems)::19 of 95
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	4,709,618
Total ungapped length	4,709,618
Number of contigs	34
Contig N50	236,406
Contig L50	8
Total number of chromosomes and plasmids	0
Number of component sequences (WGS or clone)	34

	ANI	Query coverage	Subject coverage
Declared type	na	na	na
Best-match type	83.84	46.88	41.35

Assembly

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ASM1105041v1

See Genome Information for Halomonas sp.

Pathogen Detection Resources

There are 86 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

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Taxonomy Check Data

Declared organism

Best-matching type-strain assembly for declared species

Best-matching type-strain assembly

Average Nucleotide Identity (ANI) data

ANI result