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ASM1105181v1

Organism name:
Sphingomonadales bacterium (a-proteobacteria)
Taxonomy check:
Inconclusive
Isolate:
HyVt-439
BioSample:
SAMN09638638
BioProject:
PRJNA480137
Submitter:
The University of Hong Kong
Date:
2020/03/02
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Excluded from RefSeq:
  • derived from metagenome
  • genus undefined
GenBank assembly accession:
GCA_011051815.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
DRKK01
Assembly method:
MEGAHIT v. 1.1.2
Expected final version:
yes
Genome coverage:
8.61x
Sequencing technology:
Illumina HiSeq 2500

IDs: 6092081 [UID] 17332948 [GenBank]

See Genome Information for Sphingomonadales bacterium

There are 340 assemblies for this organism

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History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::02/26/2019 00:23:54
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::4.7
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::1,873
CDSs (total)::1,852
Genes (coding)::1,837
CDSs (with protein)::1,837
Genes (RNA)::21
tRNAs::19
ncRNAs::2
Pseudo Genes (total)::15
CDSs (without protein)::15
Pseudo Genes (ambiguous residues)::0 of 15
Pseudo Genes (frameshifted)::4 of 15
Pseudo Genes (incomplete)::9 of 15
Pseudo Genes (internal stop)::4 of 15
Pseudo Genes (multiple problems)::2 of 15
##Genome-Annotation-Data-END##

Global statistics

Total sequence length1,831,777
Total ungapped length1,831,777
Number of contigs378
Contig N505,139
Contig L50118
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)378

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced1,831,7773781,831,7775,13900

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Sphingomonadales bacteriumSphingomonadales bacterium

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_014647255.1Iodidimonas muriaetype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type94.930.000.00

ANI result

Taxonomy check statusBest match statusComment
Inconclusivelow-coveragena