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ASM1105192v1

Organism name:
Deltaproteobacteria bacterium (bacteria)
Taxonomy check:
Inconclusive
Isolate:
HyVt-433
BioSample:
SAMN09638632
BioProject:
PRJNA480137
Submitter:
The University of Hong Kong
Date:
2020/03/02
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Excluded from RefSeq:
  • derived from metagenome
  • genus undefined
GenBank assembly accession:
GCA_011051925.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
DRKE01
Assembly method:
MEGAHIT v. 1.1.2
Expected final version:
yes
Genome coverage:
15.47x
Sequencing technology:
Illumina HiSeq 2500

IDs: 6092141 [UID] 17333108 [GenBank]

See Genome Information for Deltaproteobacteria bacterium

There are 2561 assemblies for this organism

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History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::02/26/2019 03:05:18
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::4.7
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::3,995
CDSs (total)::3,953
Genes (coding)::3,935
CDSs (with protein)::3,935
Genes (RNA)::42
rRNAs::1 (16S)
partial rRNAs::1 (16S)
tRNAs::38
ncRNAs::3
Pseudo Genes (total)::18
CDSs (without protein)::18
Pseudo Genes (ambiguous residues)::0 of 18
Pseudo Genes (frameshifted)::2 of 18
Pseudo Genes (incomplete)::15 of 18
Pseudo Genes (internal stop)::2 of 18
Pseudo Genes (multiple problems)::1 of 18
##Genome-Annotation-Data-END##

Global statistics

Total sequence length4,399,299
Total ungapped length4,399,299
Number of contigs552
Contig N5010,370
Contig L50133
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)552

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced4,399,2995524,399,29910,37000

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Deltaproteobacteria bacteriumDeltaproteobacteria bacterium

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_014645695.1Salinarimonas ramustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type81.330.040.04

ANI result

Taxonomy check statusBest match statusComment
Inconclusivelow-coveragena