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Source database (GenBank or RefSeq) File type

ASM1105279v1

Organism name:

Candidatus Desulfofervidus auxilii (bacteria)

Taxonomy check:

Inconclusive

Isolate:

HyVt-389

BioSample:

SAMN09638582

BioProject:

PRJNA480137

Submitter:

The University of Hong Kong

Date:

2020/03/02

Assembly type:

Assembly level:

Contig

Genome representation:

full

Excluded from RefSeq:

derived from metagenome
fragmented assembly

GenBank assembly accession:

GCA_011052795.1 (latest)

RefSeq assembly accession:

n/a

RefSeq assembly and GenBank assembly identical:

n/a

WGS Project:

DRIH01

Assembly method:

MEGAHIT v. 1.1.2

Expected final version:

yes

Genome coverage:

34.95x

Sequencing technology:

Illumina MiSeq

IDs: 6092571 [UID] 17334108 [GenBank]

See Genome Information for Candidatus Desulfofervidus auxilii

Pathogen Detection Resources

There are 9 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_011052795.1	n/a	n/a	ASM1105279v1	Contig	Latest GenBank

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI
Annotation Date::02/25/2019 21:42:41
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::4.7
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::1,531
CDSs (total)::1,498
Genes (coding)::1,465
CDSs (with protein)::1,465
Genes (RNA)::33
tRNAs::29
ncRNAs::4
Pseudo Genes (total)::33
CDSs (without protein)::33
Pseudo Genes (ambiguous residues)::0 of 33
Pseudo Genes (frameshifted)::11 of 33
Pseudo Genes (incomplete)::17 of 33
Pseudo Genes (internal stop)::6 of 33
Pseudo Genes (multiple problems)::1 of 33
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	1,314,146
Total ungapped length	1,314,146
Number of contigs	279
Contig N50	4,530
Contig L50	80
Total number of chromosomes and plasmids	0
Number of component sequences (WGS or clone)	279

	ANI	Query coverage	Subject coverage
Declared type	na	na	na
Best-match type	na	0.00	0.00

Assembly

Genome Assembly

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Download Assembly

ASM1105279v1

See Genome Information for Candidatus Desulfofervidus auxilii

Pathogen Detection Resources

There are 9 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

Global statistics

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Assembly Information

Related Information

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Global assembly definition

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Taxonomy Check Data

Declared organism

Best-matching type-strain assembly for declared species

Best-matching type-strain assembly

Average Nucleotide Identity (ANI) data

ANI result