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Source database (GenBank or RefSeq) File type

ASM1105683v1

Organism name:

Deltaproteobacteria bacterium (bacteria)

Taxonomy check:

Inconclusive

Isolate:

SpSt-1226

BioSample:

SAMN09639147

BioProject:

PRJNA480137

Submitter:

The University of Hong Kong

Date:

2020/03/02

Assembly type:

Assembly level:

Contig

Genome representation:

full

Excluded from RefSeq:

derived from metagenome
genus undefined

GenBank assembly accession:

GCA_011056835.1 (latest)

RefSeq assembly accession:

n/a

RefSeq assembly and GenBank assembly identical:

n/a

WGS Project:

DSDU01

Assembly method:

MEGAHIT v. 1.1.2

Expected final version:

yes

Genome coverage:

20.47x

Sequencing technology:

Illumina HiSeq 2500

IDs: 6094591 [UID] 17338538 [GenBank]

See Genome Information for Deltaproteobacteria bacterium

Pathogen Detection Resources

There are 2561 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_011056835.1	n/a	n/a	ASM1105683v1	Contig	Latest GenBank

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI
Annotation Date::02/26/2019 18:00:31
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::4.7
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::3,087
CDSs (total)::3,036
Genes (coding)::2,991
CDSs (with protein)::2,991
Genes (RNA)::51
rRNAs::1, 1 (5S, 16S)
partial rRNAs::1, 1 (5S, 16S)
tRNAs::45
ncRNAs::4
Pseudo Genes (total)::45
CDSs (without protein)::45
Pseudo Genes (ambiguous residues)::0 of 45
Pseudo Genes (frameshifted)::22 of 45
Pseudo Genes (incomplete)::18 of 45
Pseudo Genes (internal stop)::9 of 45
Pseudo Genes (multiple problems)::4 of 45
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	3,407,030
Total ungapped length	3,407,030
Number of contigs	261
Contig N50	20,339
Contig L50	53
Total number of chromosomes and plasmids	0
Number of component sequences (WGS or clone)	261

	ANI	Query coverage	Subject coverage
Declared type	na	na	na
Best-match type	80.90	0.11	0.10

Assembly

Genome Assembly

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ASM1105683v1

See Genome Information for Deltaproteobacteria bacterium

Pathogen Detection Resources

There are 2561 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

Global statistics

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Assembly Information

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Global assembly definition

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Taxonomy Check Data

Declared organism

Best-matching type-strain assembly for declared species

Best-matching type-strain assembly

Average Nucleotide Identity (ANI) data

ANI result