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ASM1105742v1

  • Anomalous assembly.
Organism name:
Desulfurella acetivorans (e-proteobacteria)
Taxonomy check:
Failed
Isolate:
SpSt-1262
BioSample:
SAMN09639187
BioProject:
PRJNA480137
Submitter:
The University of Hong Kong
Date:
2020/03/02
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Assembly anomaly:
unverified source organism
Excluded from RefSeq:
  • unverified source organism
  • annotation fails MAG completeness check
  • derived from metagenome
GenBank assembly accession:
GCA_011057425.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
DSFI01
Assembly method:
MEGAHIT v. 1.1.2
Expected final version:
yes
Genome coverage:
10.48x
Sequencing technology:
Illumina MiSeq

IDs: 6094871 [UID] 17339088 [GenBank]

See Genome Information for Desulfurella acetivorans

There are 3 assemblies for this organism

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History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::02/26/2019 17:30:07
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::4.7
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::1,500
CDSs (total)::1,472
Genes (coding)::1,462
CDSs (with protein)::1,462
Genes (RNA)::28
tRNAs::25
ncRNAs::3
Pseudo Genes (total)::10
CDSs (without protein)::10
Pseudo Genes (ambiguous residues)::0 of 10
Pseudo Genes (frameshifted)::6 of 10
Pseudo Genes (incomplete)::2 of 10
Pseudo Genes (internal stop)::4 of 10
Pseudo Genes (multiple problems)::2 of 10
##Genome-Annotation-Data-END##

Global statistics

Total sequence length1,350,405
Total ungapped length1,350,405
Number of contigs202
Contig N507,627
Contig L5058
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)202

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced1,350,4052021,350,4057,62700

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Desulfurella acetivoransDesulfurella acetivorans

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900101285.1Desulfurella multipotenstype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type99.1195.2072.44

ANI result

Taxonomy check statusBest match statusComment
Failedmismatchna