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Source database (GenBank or RefSeq) File type

ASM1132171v1

Organism name:

Caldithrix sp. (bacteria)

Taxonomy check:

Inconclusive

Isolate:

HyVt-55

BioSample:

SAMN09638761

BioProject:

PRJNA480137

Submitter:

The University of Hong Kong

Date:

2020/03/16

Assembly type:

Assembly level:

Contig

Genome representation:

full

Excluded from RefSeq:

derived from metagenome
fragmented assembly

GenBank assembly accession:

GCA_011321715.1 (latest)

RefSeq assembly accession:

n/a

RefSeq assembly and GenBank assembly identical:

n/a

WGS Project:

DRPC01

Assembly method:

MEGAHIT v. 1.1.2

Expected final version:

yes

Genome coverage:

6.69x

Sequencing technology:

Illumina HiSeq 2500

IDs: 6234751 [UID] 17653528 [GenBank]

See Genome Information for Caldithrix sp.

Pathogen Detection Resources

There are 14 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_011321715.1	n/a	n/a	ASM1132171v1	Contig	Latest GenBank

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI
Annotation Date::02/26/2019 05:29:07
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::4.7
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::2,907
CDSs (total)::2,870
Genes (coding)::2,831
CDSs (with protein)::2,831
Genes (RNA)::37
rRNAs::1, 1 (5S, 23S)
complete rRNAs::1 (5S)
partial rRNAs::1 (23S)
tRNAs::34
ncRNAs::1
Pseudo Genes (total)::39
CDSs (without protein)::39
Pseudo Genes (ambiguous residues)::0 of 39
Pseudo Genes (frameshifted)::15 of 39
Pseudo Genes (incomplete)::16 of 39
Pseudo Genes (internal stop)::14 of 39
Pseudo Genes (multiple problems)::6 of 39
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	3,118,106
Total ungapped length	3,118,106
Number of contigs	924
Contig N50	3,714
Contig L50	267
Total number of chromosomes and plasmids	0
Number of component sequences (WGS or clone)	924

	ANI	Query coverage	Subject coverage
Declared type	na	na	na
Best-match type	87.07	0.01	0.01

Assembly

Genome Assembly

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Download Assembly

ASM1132171v1

See Genome Information for Caldithrix sp.

Pathogen Detection Resources

There are 14 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

Global statistics

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Assembly Information

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Global assembly definition

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Assembly QA

Taxonomy Check Data

Declared organism

Best-matching type-strain assembly for declared species

Best-matching type-strain assembly

Average Nucleotide Identity (ANI) data

ANI result