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ASM1132214v1

Organism name:
Oceanithermus sp. (bacteria)
Taxonomy check:
Inconclusive
Isolate:
HyVt-515
BioSample:
SAMN09638723
BioProject:
PRJNA480137
Submitter:
The University of Hong Kong
Date:
2020/03/16
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Excluded from RefSeq:
  • derived from metagenome
  • fragmented assembly
GenBank assembly accession:
GCA_011322145.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
DRNQ01
Assembly method:
MEGAHIT v. 1.1.2
Expected final version:
yes
Genome coverage:
5.98x
Sequencing technology:
Illumina HiSeq 2500

IDs: 6234971 [UID] 17653968 [GenBank]

See Genome Information for Oceanithermus sp.

There are 8 assemblies for this organism

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History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::02/26/2019 03:11:18
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::4.7
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::772
CDSs (total)::752
Genes (coding)::744
CDSs (with protein)::744
Genes (RNA)::20
rRNAs::1, 1 (16S, 23S)
partial rRNAs::1, 1 (16S, 23S)
tRNAs::17
ncRNAs::1
Pseudo Genes (total)::8
CDSs (without protein)::8
Pseudo Genes (ambiguous residues)::0 of 8
Pseudo Genes (frameshifted)::4 of 8
Pseudo Genes (incomplete)::4 of 8
Pseudo Genes (internal stop)::0 of 8
##Genome-Annotation-Data-END##

Global statistics

Total sequence length575,891
Total ungapped length575,891
Number of contigs268
Contig N502,126
Contig L50106
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)268

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced575,891268575,8912,12600

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Oceanithermus sp.Oceanithermus sp.

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000183745.1Oceanithermus profundustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type80.6613.393.16

ANI result

Taxonomy check statusBest match statusComment
Inconclusivelow-coveragena