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ASM1132226v1

Organism name:
Sulfurimonas autotrophica (e-proteobacteria)
Taxonomy check:
Inconclusive
Isolate:
HyVt-507
BioSample:
SAMN09638714
BioProject:
PRJNA480137
Submitter:
The University of Hong Kong
Date:
2020/03/16
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Excluded from RefSeq:
  • derived from metagenome
  • fragmented assembly
GenBank assembly accession:
GCA_011322265.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
DRNH01
Assembly method:
MEGAHIT v. 1.1.2
Expected final version:
yes
Genome coverage:
8.49x
Sequencing technology:
Illumina HiSeq 2500

IDs: 6235031 [UID] 17654088 [GenBank]

See Genome Information for Sulfurimonas autotrophica

There are 4 assemblies for this organism

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History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::02/26/2019 02:38:46
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::4.7
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::1,203
CDSs (total)::1,195
Genes (coding)::1,190
CDSs (with protein)::1,190
Genes (RNA)::8
rRNAs::1 (5S)
complete rRNAs::1 (5S)
tRNAs::6
ncRNAs::1
Pseudo Genes (total)::5
CDSs (without protein)::5
Pseudo Genes (ambiguous residues)::0 of 5
Pseudo Genes (frameshifted)::0 of 5
Pseudo Genes (incomplete)::5 of 5
Pseudo Genes (internal stop)::0 of 5
##Genome-Annotation-Data-END##

Global statistics

Total sequence length1,000,490
Total ungapped length1,000,490
Number of contigs324
Contig N503,257
Contig L50103
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)324

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced1,000,4903241,000,4903,25700

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Sulfurimonas autotrophicaSulfurimonas autotrophica

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000147355.1Sulfurimonas autotrophica DSM 16294type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_014905135.1Sulfurimonas paralvinellaetype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type79.455.802.69
Best-match type81.8725.5412.29

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-mismatchna