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ASM1133073v1

Organism name:
Anaerolineae bacterium (GNS bacteria)
Taxonomy check:
Inconclusive
Isolate:
HyVt-564
BioSample:
SAMN09638777
BioProject:
PRJNA480137
Submitter:
The University of Hong Kong
Date:
2020/03/16
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Excluded from RefSeq:
  • derived from metagenome
  • fragmented assembly
  • genus undefined
GenBank assembly accession:
GCA_011330735.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
DRPS01
Assembly method:
MEGAHIT v. 1.1.2
Expected final version:
yes
Genome coverage:
6.17x
Sequencing technology:
Illumina HiSeq 2500

IDs: 6238991 [UID] 17662718 [GenBank]

See Genome Information for Anaerolineae bacterium

There are 889 assemblies for this organism

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History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::02/26/2019 05:02:57
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::4.7
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::950
CDSs (total)::945
Genes (coding)::931
CDSs (with protein)::931
Genes (RNA)::5
tRNAs::4
ncRNAs::1
Pseudo Genes (total)::14
CDSs (without protein)::14
Pseudo Genes (ambiguous residues)::0 of 14
Pseudo Genes (frameshifted)::0 of 14
Pseudo Genes (incomplete)::13 of 14
Pseudo Genes (internal stop)::1 of 14
##Genome-Annotation-Data-END##

Global statistics

Total sequence length1,039,833
Total ungapped length1,039,833
Number of contigs460
Contig N502,290
Contig L50176
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)460

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced1,039,8334601,039,8332,29000

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Anaerolineae bacteriumAnaerolineae bacterium

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_003417535.1Hydrogenophaga borboritype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type80.180.020.00

ANI result

Taxonomy check statusBest match statusComment
Inconclusivelow-coveragena