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ASM1133253v1

Organism name:
Helicobacteraceae bacterium (e-proteobacteria)
Taxonomy check:
Inconclusive
Isolate:
HyVt-596
BioSample:
SAMN09638812
BioProject:
PRJNA480137
Submitter:
The University of Hong Kong
Date:
2020/03/16
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Excluded from RefSeq:
  • derived from metagenome
  • fragmented assembly
  • genus undefined
GenBank assembly accession:
GCA_011332535.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
DRRB01
Assembly method:
MEGAHIT v. 1.1.2
Expected final version:
yes
Genome coverage:
7.22x
Sequencing technology:
Illumina MiSeq

IDs: 6239811 [UID] 17664608 [GenBank]

See Genome Information for Helicobacteraceae bacterium

There are 106 assemblies for this organism

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History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::02/26/2019 06:09:11
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::4.7
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::705
CDSs (total)::700
Genes (coding)::691
CDSs (with protein)::691
Genes (RNA)::5
rRNAs::2, 1 (5S, 23S)
complete rRNAs::2 (5S)
partial rRNAs::1 (23S)
tRNAs::2
ncRNAs::0
Pseudo Genes (total)::9
CDSs (without protein)::9
Pseudo Genes (ambiguous residues)::0 of 9
Pseudo Genes (frameshifted)::0 of 9
Pseudo Genes (incomplete)::4 of 9
Pseudo Genes (internal stop)::5 of 9
##Genome-Annotation-Data-END##

Global statistics

Total sequence length556,434
Total ungapped length556,434
Number of contigs172
Contig N503,141
Contig L5071
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)172

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced556,434172556,4343,14100

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Helicobacteraceae bacteriumHelicobacteraceae bacterium

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_014905135.1Sulfurimonas paralvinellaetype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type81.721.460.39

ANI result

Taxonomy check statusBest match statusComment
Inconclusivelow-coveragena