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ASM1137110v1

Organism name:
Campylobacterales bacterium (e-proteobacteria)
Taxonomy check:
Inconclusive
Isolate:
HyVt-614
BioSample:
SAMN09638833
BioProject:
PRJNA480137
Submitter:
The University of Hong Kong
Date:
2020/03/16
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Excluded from RefSeq:
  • derived from metagenome
  • fragmented assembly
  • genus undefined
GenBank assembly accession:
GCA_011371105.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
DRRV01
Assembly method:
MEGAHIT v. 1.1.2
Expected final version:
yes
Genome coverage:
9.14x
Sequencing technology:
Illumina MiSeq

IDs: 6260581 [UID] 17705758 [GenBank]

See Genome Information for Campylobacterales bacterium

There are 218 assemblies for this organism

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History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::02/26/2019 07:24:16
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::4.7
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::1,452
CDSs (total)::1,425
Genes (coding)::1,405
CDSs (with protein)::1,405
Genes (RNA)::27
tRNAs::26
ncRNAs::1
Pseudo Genes (total)::20
CDSs (without protein)::20
Pseudo Genes (ambiguous residues)::0 of 20
Pseudo Genes (frameshifted)::4 of 20
Pseudo Genes (incomplete)::11 of 20
Pseudo Genes (internal stop)::6 of 20
Pseudo Genes (multiple problems)::1 of 20
##Genome-Annotation-Data-END##

Global statistics

Total sequence length1,299,272
Total ungapped length1,299,272
Number of contigs303
Contig N504,217
Contig L50102
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)303

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced1,299,2723031,299,2724,21700

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Campylobacterales bacteriumCampylobacterales bacterium

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001595645.1Sulfurovum riftiaetype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type83.570.310.17

ANI result

Taxonomy check statusBest match statusComment
Inconclusivelow-coveragena