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ASM1137610v1

Organism name:
Deltaproteobacteria bacterium (bacteria)
Taxonomy check:
Inconclusive
Isolate:
HyVt-553
BioSample:
SAMN09638765
BioProject:
PRJNA480137
Submitter:
The University of Hong Kong
Date:
2020/03/17
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Excluded from RefSeq:
  • derived from metagenome
  • genus undefined
GenBank assembly accession:
GCA_011376105.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
DRPG01
Assembly method:
MEGAHIT v. 1.1.2
Expected final version:
yes
Genome coverage:
12.37x
Sequencing technology:
Illumina HiSeq 2500

IDs: 6267171 [UID] 17711378 [GenBank]

See Genome Information for Deltaproteobacteria bacterium

There are 2561 assemblies for this organism

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History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::02/26/2019 11:27:59
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::4.7
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::5,748
CDSs (total)::5,670
Genes (coding)::5,471
CDSs (with protein)::5,471
Genes (RNA)::78
rRNAs::1 (5S)
complete rRNAs::1 (5S)
tRNAs::73
ncRNAs::4
Pseudo Genes (total)::199
CDSs (without protein)::199
Pseudo Genes (ambiguous residues)::0 of 199
Pseudo Genes (frameshifted)::8 of 199
Pseudo Genes (incomplete)::193 of 199
Pseudo Genes (internal stop)::11 of 199
Pseudo Genes (multiple problems)::12 of 199
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length6,699,292
Total ungapped length6,699,292
Number of contigs766
Contig N5012,747
Contig L50167
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)766

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced6,699,2927666,699,29212,74700

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Deltaproteobacteria bacteriumDeltaproteobacteria bacterium

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900188205.1Geodermatophilus saharensistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type79.600.010.01

ANI result

Taxonomy check statusBest match statusComment
Inconclusivelow-coveragena