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IDs: 7111621 [UID] 19540318 [GenBank]
Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/ This draft WGS assembly was generated by running SKESA to generate a de-novo assembly. The de-novo assembly was then ... concatenated with contigs generated using a guided assembler using antimicrobial resistance genes as baits to comprehensively catalog the set of resistance genes in the isolate. Note, some parts of the contigs derived from the guided assembler may overlap de-novo contigs, and other guided assembler contigs. De-novo contigs can be differentiated from guided assembler contigs by their names , which include either 'denovo' or 'guided'. more
##Genome-Annotation-Data-START##Annotation Date::06/28/2018 07:04:48Annotation Method::Best-placed reference protein set; GeneMarkS+Annotation Pipeline::NCBI Prokaryotic Genome Annotation PipelineAnnotation Provider::NCBIFeatures Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_regionAnnotation Software revision::4.5Genes (total)::5,573CDS (total)::5,489Genes (coding)::5,255CDS (coding)::5,255Genes (RNA)::84rRNAs::2, 1, 2 (5S, 16S, 23S)complete rRNAs::2 (5S)partial rRNAs::1, 2 (16S, 23S)tRNAs::70ncRNAs::9Pseudo Genes (total)::234Pseudo Genes (ambiguous residues)::0 of 234Pseudo Genes (frameshifted)::87 of 234Pseudo Genes (incomplete)::113 of 234Pseudo Genes (internal stop)::70 of 234Pseudo Genes (multiple problems)::34 of 234CRISPR Arrays::2##Genome-Annotation-Data-END##
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