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UNSW_CanFamBas_1.2

Organism name:
Canis lupus familiaris (dog)
Infraspecific name:
Breed: Basenji
Isolate:
UNSW-BAS-2019
Sex:
female
BioSample:
SAMN14380863
BioProject:
PRJNA612738
Submitter:
University of New South Wales
Date:
2021/02/23
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_013276365.2 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
JAAQRD02
Assembly method:
Flye v. 2.6; Juicebox v. DEC-2019; PBJelly v. 15.8.24; PAFScaff v. 0.4.0; Diploidocus v. 0.9.0; Manual curation v. MAY-2020
Expected final version:
yes
Genome coverage:
112.2x
Sequencing technology:
Oxford Nanopore PromethION; BGISEQ-500; Illumina NovaSeq

IDs: 9307881 [UID] 25056048 [GenBank]

See Genome Information for Canis lupus

There are 27 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length2,344,986,233
Total ungapped length2,344,909,802
Gaps between scaffolds0
Number of scaffolds631
Scaffold N5064,291,023
Scaffold L5014
Number of contigs780
Contig N5037,759,230
Contig L5023
Total number of chromosomes and plasmids39
Number of component sequences (WGS or clone)631

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCA_013276585.2)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM023363.1n/an/a0
Chromosome 2CM023364.1n/an/a0
Chromosome 3CM023365.1n/an/a0
Chromosome 4CM023366.1n/an/a0
Chromosome 5CM023367.1n/an/a0
Chromosome 6CM023368.1n/an/a0
Chromosome 7CM023369.1n/an/a0
Chromosome 8CM023370.1n/an/a0
Chromosome 9CM023371.1n/an/a0
Chromosome 10CM023372.1n/an/a0
Chromosome 11CM023373.1n/an/a0
Chromosome 12CM023374.1n/an/a0
Chromosome 13CM023375.1n/an/a0
Chromosome 14CM023376.1n/an/a0
Chromosome 15CM023377.1n/an/a0
Chromosome 16CM023378.1n/an/a0
Chromosome 17CM023379.1n/an/a0
Chromosome 18CM023380.1n/an/a0
Chromosome 19CM023381.1n/an/a0
Chromosome 20CM023382.1n/an/a0
Chromosome 21CM023383.1n/an/a0
Chromosome 22CM023384.1n/an/a0
Chromosome 23CM023385.1n/an/a0
Chromosome 24CM023386.1n/an/a0
Chromosome 25CM023387.1n/an/a0
Chromosome 26CM023388.1n/an/a0
Chromosome 27CM023389.1n/an/a0
Chromosome 28CM023390.1n/an/a0
Chromosome 29CM023391.2n/an/a0
Chromosome 30CM023392.1n/an/a0
Chromosome 31CM023393.1n/an/a0
Chromosome 32CM023394.1n/an/a0
Chromosome 33CM023395.1n/an/a0
Chromosome 34CM023396.1n/an/a0
Chromosome 35CM023397.1n/an/a0
Chromosome 36CM023398.1n/an/a0
Chromosome 37CM023399.1n/an/a0
Chromosome 38CM023400.1n/an/a0
Chromosome XCM023401.1n/an/a0
unplacedn/an/an/a592

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
All2,344,986,2336312,344,909,80264,291,0231490
Chromosome 1122,495,8321122,492,832122,495,83260
Chromosome 283,937,118183,935,11883,937,11840
Chromosome 392,105,948192,104,94892,105,94820
Chromosome 488,678,928188,677,92888,678,92820
Chromosome 588,932,562188,931,06288,932,56230
Chromosome 677,624,785177,624,28577,624,78510
Chromosome 780,731,069180,730,06980,731,06920
Chromosome 873,571,895173,571,89573,571,89500
Chromosome 961,088,559161,086,05961,088,55950
Chromosome 1070,337,451170,336,95170,337,45110
Chromosome 1174,079,022174,077,02274,079,02240
Chromosome 1272,601,125172,601,12572,601,12500
Chromosome 1363,189,501163,189,00163,189,50110
Chromosome 1460,727,891160,727,89160,727,89100
Chromosome 1564,291,023164,290,02364,291,02320
Chromosome 1659,917,745159,912,24559,917,745110
Chromosome 1764,428,229164,426,72964,428,22930
Chromosome 1855,524,946155,523,44655,524,94630
Chromosome 1954,051,281154,049,78154,051,28130
Chromosome 2058,423,659158,423,65958,423,65900
Chromosome 2151,098,066151,097,06651,098,06620
Chromosome 2261,548,924161,547,42461,548,92430
Chromosome 2352,864,858152,864,35852,864,85810
Chromosome 2447,805,869147,805,36947,805,86910
Chromosome 2551,434,566151,434,06651,434,56610
Chromosome 2637,989,690137,984,49737,989,690110
Chromosome 2746,255,058146,255,05846,255,05800
Chromosome 2841,327,378141,326,37841,327,37820
Chromosome 2941,986,439141,986,43941,986,43900
Chromosome 3040,429,152140,429,15240,429,15200
Chromosome 3139,358,666139,358,66639,358,66600
Chromosome 3238,764,302138,763,80238,764,30210
Chromosome 3331,480,421131,479,92131,480,42110
Chromosome 3442,143,512142,143,01242,143,51210
Chromosome 3526,557,760126,557,76026,557,76000
Chromosome 3631,053,474131,053,47431,053,47400
Chromosome 3730,789,429130,789,42930,789,42900
Chromosome 3824,377,179124,377,17924,377,17900
Chromosome X125,260,7081125,246,454125,260,708230
unplaced15,722,21359215,698,229114,754490