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mRatBN7.1

  • Record removed. This version of the assembly has been suppressed.
Organism name:
Rattus norvegicus (Norway rat)
Infraspecific name:
Strain: BN/NHsdMcwi
Sex:
male
BioSample:
SAMN16261960
BioProject:
PRJNA662791
Submitter:
Wellcome Sanger Institute
Date:
2020/11/10
Assembly type:
haploid (principal pseudohaplotype of diploid)
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_015227675.1 (suppressed)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
JACYVU01
Assembly method:
FALCON-Unzip v. 2020
Expected final version:
yes
Genome coverage:
92.0x
Sequencing technology:
PacBio Sequel; 10X Genomics Chromium; BioNano; Arima Hi-C
Linked assembly:
GCA_015244455.1 (alternate pseudohaplotype of diploid)

IDs: 8469881 [UID] 23037708 [GenBank]

See Genome Information for Rattus norvegicus

Pathogen Detection Resources

There are 14 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length2,647,915,728
Total ungapped length2,626,580,772
Gaps between scaffolds0
Number of scaffolds176
Scaffold N50135,012,528
Scaffold L508
Number of contigs757
Contig N5029,198,295
Contig L5027
Total number of chromosomes and plasmids23
Number of component sequences (WGS or clone)757

Supplemental Content

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Assembly Information

Related Information

  • Linked assembly from diploid
    Genome assembly that is the other (pseudo)haplotype from the same diploid individual as the current genome assembly.

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
Assembly Unit: Primary Assembly (GCA_015227685.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM026974.1=NC_051336.10
Chromosome 2CM026975.1=NC_051337.10
Chromosome 3CM026976.1=NC_051338.10
Chromosome 4CM026977.1=NC_051339.10
Chromosome 5CM026978.1=NC_051340.10
Chromosome 6CM026979.1=NC_051341.10
Chromosome 7CM026980.1=NC_051342.10
Chromosome 8CM026981.1=NC_051343.10
Chromosome 9CM026982.1=NC_051344.10
Chromosome 10CM026983.1=NC_051345.10
Chromosome 11CM026984.1=NC_051346.10
Chromosome 12CM026985.1=NC_051347.12
Chromosome 13CM026986.1=NC_051348.10
Chromosome 14CM026987.1=NC_051349.10
Chromosome 15CM026988.1=NC_051350.10
Chromosome 16CM026989.1=NC_051351.10
Chromosome 17CM026990.1=NC_051352.10
Chromosome 18CM026991.1=NC_051353.10
Chromosome 19CM026992.1=NC_051354.15
Chromosome 20CM026993.1=NC_051355.10
Chromosome XCM026994.1=NC_051356.10
Chromosome YCM026995.1=NC_051357.15
unplacedn/an/an/a141

Assembly statistics

MoleculeSequence RoleTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
AllAssembled molecule2,647,899,4151752,626,564,459135,012,5285810
Chromosome 1Assembled molecule260,522,0161258,740,643260,522,016540
Chromosome 2Assembled molecule249,053,2671247,804,467249,053,267240
Chromosome 3Assembled molecule169,034,2311168,257,388169,034,231420
Chromosome 4Assembled molecule182,687,7541180,891,334182,687,754280
Chromosome 5Assembled molecule166,875,0581166,856,480166,875,05890
Chromosome 6Assembled molecule140,994,0611140,333,116140,994,06170
Chromosome 7Assembled molecule135,012,5281134,984,573135,012,528160
Chromosome 8Assembled molecule123,900,1841123,536,111123,900,184120
Chromosome 9Assembled molecule114,175,3091113,475,783114,175,309140
Chromosome 10Assembled molecule107,211,1421107,066,559107,211,14240
Chromosome 11Assembled molecule86,241,447186,241,24786,241,44710
Chromosome 12AllAssembled moleculeUnlocalized scaffolds48,281,72246,669,0291,612,69331248,005,64846,667,8291,337,81946,669,02946,669,0291,402,6231376000
Chromosome 13Assembled molecule106,807,6941106,711,721106,807,69470
Chromosome 14Assembled molecule104,886,0431104,710,513104,886,04370
Chromosome 15Assembled molecule101,769,1071101,064,312101,769,107170
Chromosome 16Assembled molecule84,729,064184,315,70884,729,064100
Chromosome 17Assembled molecule86,533,673186,166,73486,533,673130
Chromosome 18Assembled molecule83,828,827183,820,39883,828,82740
Chromosome 19AllAssembled moleculeUnlocalized scaffolds57,621,69357,337,602284,09161557,574,52357,290,432284,09157,337,60257,337,602202,99711110000
Chromosome 20Assembled molecule54,435,887154,374,97454,435,887100
Chromosome XAssembled molecule152,453,6511148,772,591152,453,6511610
Chromosome YAllAssembled moleculeUnlocalized scaffolds21,785,67818,315,8413,469,83761513,998,29411,994,2442,004,05018,315,84118,315,8411,794,995685810000
unplacedAssembled molecule9,059,3791418,861,342100,634490
MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
Mitochondrion MT16,313116,31316,31300