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ASM1577677v1

Organism name:
Crassostrea hongkongensis (Hong Kong oyster)
Isolate:
GH-20181223
BioSample:
SAMN11935674
BioProject:
PRJNA545849
Submitter:
Guangxi Academy of Fisheries Science
Date:
2020/12/08
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_015776775.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
VIAA01
Assembly method:
FALCON v. 201608
Expected final version:
yes
Genome coverage:
125.0x
Sequencing technology:
PacBio Sequel

IDs: 8722961 [UID] 23658568 [GenBank]

See Genome Information for Crassostrea hongkongensis

Pathogen Detection Resources

History (Show revision history)

Comment

The gaps of the scaffold were assemblied using paired-ends reads. These scaffolds were assembled into chromosomes based on a high-density linkage map from Crassostrea gigas.

Global statistics

Total sequence length608,622,584
Total ungapped length608,607,574
Gaps between scaffolds0
Number of scaffolds659
Scaffold N5055,855,599
Scaffold L505
Number of contigs1,071
Contig N502,576,225
Contig L5074
Total number of chromosomes and plasmids11
Number of component sequences (WGS or clone)659

Supplemental Content

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Assembly Information

Related Information

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
Assembly Unit: Primary Assembly (GCA_015776845.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM027466.1n/an/a0
Chromosome 2CM027467.1n/an/a0
Chromosome 3CM027468.1n/an/a0
Chromosome 4CM027469.1n/an/a0
Chromosome 5CM027470.1n/an/a0
Chromosome 6CM027471.1n/an/a0
Chromosome 7CM027472.1n/an/a0
Chromosome 8CM027473.1n/an/a0
Chromosome 9CM027474.1n/an/a0
Chromosome 10CM027475.1n/an/a0
unplacedn/an/an/a647

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
All607,923,123657607,908,13355,855,5994100
Chromosome 164,470,731164,469,07164,470,731400
Chromosome 263,871,430163,869,75063,871,430420
Chromosome 344,785,271144,784,13144,785,271240
Chromosome 435,911,622135,909,73235,911,622450
Chromosome 551,606,302151,604,19251,606,302490
Chromosome 655,627,392155,625,92255,627,392390
Chromosome 755,855,599155,854,65955,855,599220
Chromosome 862,882,943162,881,41362,882,943270
Chromosome 957,396,293157,395,37357,396,293290
Chromosome 1028,707,990128,707,06028,707,990210
unplaced86,807,55064786,806,830744,857720
MoleculeSequence RoleTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
Mitochondrion MTAllAssembled moleculeUnlocalized scaffolds699,4610699,461202699,4410699,441484,8810484,881202000