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bf_hap-2

Organism name:
Branchiostoma floridae x Branchiostoma japonicum (lancelets)
Isolate:
bjbf
BioSample:
SAMN13896449
BioProject:
PRJNA647830
Submitter:
University of Vienna
Date:
2020/12/09
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_015852565.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
JACEVJ01
Assembly method:
canu v. 1.7.1; 3d-DNA v. 180922
Expected final version:
yes
Genome coverage:
48.0x
Sequencing technology:
PacBio Sequel

IDs: 8746661 [UID] 23714198 [GenBank]

See Genome Information for Branchiostoma floridae x Branchiostoma japonicum

There are 2 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length490,782,628
Total ungapped length490,698,628
Gaps between scaffolds0
Number of scaffolds341
Scaffold N5024,617,471
Scaffold L509
Number of contigs509
Contig N506,372,543
Contig L5023
Total number of chromosomes and plasmids19
Number of component sequences (WGS or clone)341

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCA_015852575.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM027632.1n/an/a0
Chromosome 2CM027633.1n/an/a0
Chromosome 3CM027634.1n/an/a0
Chromosome 4CM027635.1n/an/a0
Chromosome 5CM027636.1n/an/a0
Chromosome 6CM027637.1n/an/a0
Chromosome 7CM027638.1n/an/a0
Chromosome 8CM027639.1n/an/a0
Chromosome 9CM027640.1n/an/a0
Chromosome 10CM027641.1n/an/a0
Chromosome 11CM027642.1n/an/a0
Chromosome 12CM027643.1n/an/a0
Chromosome 13CM027644.1n/an/a0
Chromosome 14CM027645.1n/an/a0
Chromosome 15CM027646.1n/an/a0
Chromosome 16CM027647.1n/an/a0
Chromosome 17CM027648.1n/an/a0
Chromosome 18CM027649.1n/an/a0
Chromosome 19CM027650.1n/an/a0
unplacedn/an/an/a322

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
All490,782,628341490,698,62824,617,4711680
Chromosome 134,052,543134,049,04334,052,54370
Chromosome 234,421,708134,415,70834,421,708120
Chromosome 333,741,523133,738,02333,741,52370
Chromosome 427,505,181127,499,68127,505,181110
Chromosome 524,376,856124,374,35624,376,85650
Chromosome 626,009,725126,008,22526,009,72530
Chromosome 725,385,209125,380,20925,385,209100
Chromosome 826,755,091126,751,59126,755,09170
Chromosome 923,080,657123,077,65723,080,65760
Chromosome 1022,231,435122,229,93522,231,43530
Chromosome 1123,477,568123,475,56823,477,56840
Chromosome 1224,617,471124,613,47124,617,47180
Chromosome 1318,786,107118,783,10718,786,10760
Chromosome 1421,980,613121,977,61321,980,61360
Chromosome 1521,286,318121,282,31821,286,31880
Chromosome 1633,820,775133,816,27533,820,77590
Chromosome 1719,482,894119,479,39419,482,89470
Chromosome 1821,265,962121,263,46221,265,96250
Chromosome 1917,983,721117,983,22117,983,72110
unplaced10,521,27132210,499,77141,464430