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LBV136

Organism name:
Anopheles coluzzii (mosquitos)
Isolate:
LBV136
BioSample:
SAMN16754238
BioProject:
PRJNA676011
Submitter:
Institut de Biologia Evolutiva
Date:
2020/12/20
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_016097095.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
JADQCV01
Assembly method:
Canu v. 1.8
Expected final version:
yes
Reference guided assembly:
GCA_000005575.1
Genome coverage:
34x
Sequencing technology:
Oxford Nanopore MinION

IDs: 8871911 [UID] 24001908 [GenBank]

See Genome Information for Anopheles coluzzii

There are 12 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length236,320,436
Total ungapped length236,032,136
Gaps between scaffolds0
Number of scaffolds28
Scaffold N5052,053,293
Scaffold L503
Number of contigs2,911
Contig N50254,469
Contig L50237
Total number of chromosomes and plasmids5
Number of component sequences (WGS or clone)28

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCA_016097155.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome XCM027931.1n/an/a0
Chromosome 2LCM027932.1n/an/a0
Chromosome 2RCM027933.1n/an/a0
Chromosome 3LCM027934.1n/an/a0
Chromosome 3RCM027935.1n/an/a0
unplacedn/an/an/a23

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
All236,320,43628236,032,13652,053,2932,8830
Chromosome X27,432,994127,378,59427,432,9945440
Chromosome 2L53,644,240153,578,04053,644,2406620
Chromosome 2R61,793,883161,731,88361,793,8836200
Chromosome 3L41,260,626141,216,42641,260,6264420
Chromosome 3R52,053,293151,991,79352,053,2936150
unplaced135,40023135,4009,09300