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LBV88

Organism name:
Anopheles coluzzii (mosquitos)
Isolate:
LBV88
BioSample:
SAMN16754237
BioProject:
PRJNA676011
Submitter:
Institut de Biologia Evolutiva
Date:
2020/12/20
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_016097195.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
JADQCW01
Assembly method:
Canu v. 1.8
Expected final version:
yes
Reference guided assembly:
GCA_000005575.1
Genome coverage:
31x
Sequencing technology:
Oxford Nanopore MinION

IDs: 8871881 [UID] 24001878 [GenBank]

See Genome Information for Anopheles coluzzii

There are 12 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length244,905,343
Total ungapped length244,649,643
Gaps between scaffolds0
Number of scaffolds19
Scaffold N5054,449,966
Scaffold L503
Number of contigs2,576
Contig N50331,709
Contig L50196
Total number of chromosomes and plasmids5
Number of component sequences (WGS or clone)19

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCA_016097235.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome XCM027916.1n/an/a0
Chromosome 2LCM027917.1n/an/a0
Chromosome 2RCM027918.1n/an/a0
Chromosome 3LCM027919.1n/an/a0
Chromosome 3RCM027920.1n/an/a0
unplacedn/an/an/a14

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
All244,905,34319244,649,64354,449,9662,5570
Chromosome X29,404,645129,358,54529,404,6454610
Chromosome 2L54,449,966154,394,36654,449,9665560
Chromosome 2R63,097,825163,043,72563,097,8255410
Chromosome 3L42,560,165142,519,76542,560,1654040
Chromosome 3R55,290,282155,230,78255,290,2825950
unplaced102,46014102,4609,45200