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mHomSap3.mat

Organism name:
Homo sapiens (human)
Isolate:
mHomSap3
Sex:
male
BioSample:
SAMN12568975
BioProject:
PRJNA562023
Submitter:
Vertebrate Genomes Project
Date:
2021/01/19
Assembly type:
haploid (principal pseudohaplotype of diploid)
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_016695395.2 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
JACSEX01
Assembly method:
TrioCanu v. 1.8; purge_dups v. 1.0.0; Scaff 10x v. 4.1.0; Bionano solve v. 3.2.1_04122018; Salsa2 HiC v. 2.2; Arrow polishing and gap filling v. SMRTLink7.0.1; Freebayes v. 1.3.1; gEVAL manual curation v. 2020-07-16; VGP trio assembly pipeline v. 1.6
Expected final version:
no
Genome coverage:
73.27x
Sequencing technology:
PacBio Sequel I CLR; Illumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS
Linked assembly:
GCA_016700455.2 (alternate pseudohaplotype of diploid)

IDs: 9319981 [UID] 25101628 [GenBank]

See Genome Information for Homo sapiens

Pathogen Detection Resources

There are 1094 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length2,902,214,236
Total ungapped length2,891,837,392
Gaps between scaffolds0
Number of scaffolds950
Scaffold N50150,534,096
Scaffold L508
Number of contigs2,166
Contig N5012,076,592
Contig L5063
Total number of chromosomes and plasmids24
Number of component sequences (WGS or clone)950

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
Assembly Unit: Primary Assembly (GCA_016695425.2)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM028458.1n/an/a1
Chromosome 2CM028459.1n/an/a0
Chromosome 3CM028460.1n/an/a0
Chromosome 4CM028461.1n/an/a0
Chromosome 5CM028462.1n/an/a0
Chromosome 6CM028463.1n/an/a1
Chromosome 7CM028464.1n/an/a0
Chromosome 8CM028465.1n/an/a0
Chromosome 9CM028466.1n/an/a4
Chromosome 10CM028467.1n/an/a0
Chromosome 11CM028468.1n/an/a0
Chromosome 12CM028469.1n/an/a0
Chromosome 13CM028470.1n/an/a0
Chromosome 14CM028471.1n/an/a1
Chromosome 15CM028472.1n/an/a4
Chromosome 16CM028473.1n/an/a0
Chromosome 17CM028474.1n/an/a1
Chromosome 18CM028475.1n/an/a0
Chromosome 19CM028476.1n/an/a0
Chromosome 20CM028477.1n/an/a0
Chromosome 21CM028478.1n/an/a0
Chromosome 22CM028479.1n/an/a0
Chromosome XCM028480.1n/an/a0
unplacedn/an/an/a914

Assembly statistics

MoleculeSequence RoleTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
AllAssembled molecule2,902,197,6709492,891,820,826150,534,0961,2160
Chromosome 1AllAssembled moleculeUnlocalized scaffolds222,867,187222,621,587245,600211221,869,796221,624,196245,600222,621,587222,621,587245,60079790000
Chromosome 2Assembled molecule237,301,5881236,721,853237,301,588680
Chromosome 3Assembled molecule195,443,3831195,317,949195,443,383340
Chromosome 4Assembled molecule187,549,0731186,938,299187,549,073430
Chromosome 5Assembled molecule177,035,9771176,369,622177,035,977480
Chromosome 6AllAssembled moleculeUnlocalized scaffolds169,140,663168,909,445231,218211169,052,915168,821,897231,018168,909,445168,909,445231,21841392000
Chromosome 7Assembled molecule155,511,0061154,579,908155,511,006810
Chromosome 8Assembled molecule142,343,0341142,192,510142,343,034280
Chromosome 9AllAssembled moleculeUnlocalized scaffolds113,276,543112,132,9561,143,587514112,666,834111,606,2751,060,559112,132,956112,132,956666,568544410000
Chromosome 10Assembled molecule131,232,8411130,799,781131,232,841530
Chromosome 11Assembled molecule129,950,4201129,509,508129,950,420550
Chromosome 12Assembled molecule130,526,7671130,231,015130,526,767470
Chromosome 13Assembled molecule95,985,944195,923,40495,985,944140
Chromosome 14AllAssembled moleculeUnlocalized scaffolds88,634,00087,686,180947,82021188,325,13187,685,067640,06487,686,18087,686,180947,82017125000
Chromosome 15AllAssembled moleculeUnlocalized scaffolds81,907,39380,105,1191,802,27451481,581,69479,781,4911,800,20380,105,11980,105,119374,59853449000
Chromosome 16Assembled molecule80,018,959178,685,53180,018,959830
Chromosome 17AllAssembled moleculeUnlocalized scaffolds78,508,22578,227,875280,35021178,210,06377,929,813280,25078,227,87578,227,875280,35057561000
Chromosome 18Assembled molecule74,617,153174,527,91074,617,153120
Chromosome 19Assembled molecule56,028,596155,467,76456,028,596720
Chromosome 20Assembled molecule61,184,887160,982,52661,184,887170
Chromosome 21Assembled molecule33,504,791133,128,06833,504,79160
Chromosome 22Assembled molecule33,866,827133,575,26033,866,827160
Chromosome XAssembled molecule150,534,0961150,197,216150,534,096530
unplacedAssembled molecule75,228,31791474,966,269109,5231850
MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
Mitochondrion MT16,566116,56616,56600