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mHomSap3.pat

Organism name:
Homo sapiens (human)
Isolate:
mHomSap3
Sex:
male
BioSample:
SAMN12568975
BioProject:
PRJNA562022
Submitter:
Vertebrate Genomes Project
Date:
2021/01/19
Assembly type:
alternate-pseudohaplotype
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_016700455.2 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
JACSEW01
Assembly method:
TrioCanu v. 1.8; purge_dups v. 1.0.0; Scaff 10x v. 4.1.0; Bionano solve v. 3.2.1_04122018; Salsa2 HiC v. 2.2; Arrow polishing and gap filling v. SMRTLink7.0.1; Freebayes v. 1.3.1; gEVAL manual curation v. 2020-07-16; VGP trio assembly pipeline v. 1.6
Expected final version:
no
Genome coverage:
73.27x
Sequencing technology:
PacBio Sequel I CLR; Illumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS
Linked assembly:
GCA_016695395.2 (principal pseudohaplotype of diploid)

IDs: 9319991 [UID] 25102108 [GenBank]

See Genome Information for Homo sapiens

There are 1082 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length2,744,463,177
Total ungapped length2,733,494,881
Gaps between scaffolds0
Number of scaffolds994
Scaffold N50142,230,338
Scaffold L508
Number of contigs2,165
Contig N5013,671,004
Contig L5056
Total number of chromosomes and plasmids23
Number of component sequences (WGS or clone)994

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCA_016700465.2)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM028562.1n/an/a1
Chromosome 2CM028563.1n/an/a0
Chromosome 3CM028564.1n/an/a0
Chromosome 4CM028565.1n/an/a0
Chromosome 5CM028566.1n/an/a0
Chromosome 6CM028567.1n/an/a1
Chromosome 7CM028568.1n/an/a0
Chromosome 8CM028569.1n/an/a0
Chromosome 9CM028570.1n/an/a4
Chromosome 10CM028571.1n/an/a0
Chromosome 11CM028572.1n/an/a0
Chromosome 12CM028573.1n/an/a0
Chromosome 13CM028574.1n/an/a0
Chromosome 14CM028575.1n/an/a1
Chromosome 15CM028576.1n/an/a2
Chromosome 16CM028577.1n/an/a0
Chromosome 17CM028578.1n/an/a0
Chromosome 18CM028579.1n/an/a0
Chromosome 19CM028580.1n/an/a0
Chromosome 20CM028581.1n/an/a0
Chromosome 21CM028582.1n/an/a1
Chromosome 22CM028583.1n/an/a0
Chromosome YCM028584.1n/an/a0
unplacedn/an/an/a961

Assembly statistics

MoleculeSequence RoleTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
AllAssembled molecule2,744,463,1779942,733,494,881142,230,3381,1710
Chromosome 1AllAssembled moleculeUnlocalized scaffolds223,709,656223,184,783524,873211222,547,076222,093,053454,023223,184,783223,184,783524,87380782000
Chromosome 2Assembled molecule236,613,0531235,841,357236,613,053680
Chromosome 3Assembled molecule195,999,1441195,670,023195,999,144500
Chromosome 4Assembled molecule187,259,6511186,812,504187,259,651310
Chromosome 5Assembled molecule176,673,4471176,404,976176,673,447410
Chromosome 6AllAssembled moleculeUnlocalized scaffolds168,907,956168,491,643416,313211168,853,827168,437,614416,213168,491,643168,491,643416,31333321000
Chromosome 7Assembled molecule154,437,8441153,696,039154,437,8441120
Chromosome 8Assembled molecule142,230,3381141,650,166142,230,338130
Chromosome 9AllAssembled moleculeUnlocalized scaffolds113,163,413112,067,9971,095,416514112,501,855111,579,016922,839112,067,997112,067,997263,73246388000
Chromosome 10Assembled molecule130,389,5111130,163,381130,389,511460
Chromosome 11Assembled molecule131,330,3611130,928,153131,330,361430
Chromosome 12Assembled molecule130,559,6691130,454,055130,559,669430
Chromosome 13Assembled molecule95,587,294195,586,19495,587,29470
Chromosome 14AllAssembled moleculeUnlocalized scaffolds89,434,08588,583,118850,96721189,178,78088,328,913849,86788,583,11888,583,118850,96725187000
Chromosome 15AllAssembled moleculeUnlocalized scaffolds80,366,90179,618,042748,85931279,963,76479,233,604730,16079,618,04279,618,042663,54142357000
Chromosome 16Assembled molecule78,584,553177,295,03178,584,553780
Chromosome 17Assembled molecule78,960,371178,256,34678,960,371790
Chromosome 18Assembled molecule74,818,531174,607,06374,818,531110
Chromosome 19Assembled molecule55,550,081155,112,80955,550,081780
Chromosome 20Assembled molecule60,722,473160,478,75360,722,473270
Chromosome 21AllAssembled moleculeUnlocalized scaffolds35,675,61333,717,5381,958,07521135,335,67233,715,9381,619,73433,717,53833,717,5381,958,075231211000
Chromosome 22Assembled molecule34,566,550134,478,18634,566,550270
Chromosome YAssembled molecule23,092,635122,607,62623,092,635470
unplacedAssembled molecule45,830,04796145,071,24586,4651210
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