CAU_O.aries_1.0

Organism name:: Ovis aries (sheep)
Infraspecific name:: Breed: Tibetan sheep
Sex:: female
BioSample:: SAMN17088352
BioProject:: PRJNA685905
Submitter:: China Agricultural University
Date:: 2021/03/24
Assembly level:: Chromosome
Genome representation:: full
GenBank assembly accession:: GCA_017524585.1 (latest)
RefSeq assembly accession:: n/a
RefSeq assembly and GenBank assembly identical:: n/a
WGS Project:: JAEMGP01
Assembly method:: NextDenovo v. 2.3.1; NextPolish v. 1.3.0; Bionano Solve v. 3.3; LACHESIS v. latest
Expected final version:: yes
Reference guided assembly:: GCF_002742125.1
Genome coverage:: 171.37x
Sequencing technology:: PacBio Sequel; Illumina NovaSeq

IDs: 9637331 [UID] 25788728 [GenBank]

See Genome Information for Ovis aries

Pathogen Detection Resources

There are 58 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_017524585.1	n/a	n/a	CAU_O.aries_1.0	Chromosome	Latest GenBank

Comment

Contigs were assembled using NextDeno and Nextpolish. Next Bionano was used to assemble scaffolds with runs of exactly 13 N's representing unknown length gaps. Finally Hi-C was used to assemble chromosomes with runs of exactly 100 N's representing unknown ... length gaps.  more

Global statistics

Total sequence length	2,653,843,355
Total ungapped length	2,648,935,940
Gaps between scaffolds	0
Number of scaffolds	58
Scaffold N50	105,184,753
Scaffold L50	8
Number of contigs	168
Contig N50	74,601,179
Contig L50	13
Total number of chromosomes and plasmids	27
Number of component sequences (WGS or clone)	58

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM029819.1	n/a	n/a	0
Chromosome 2	CM029820.1	n/a	n/a	0
Chromosome 3	CM029821.1	n/a	n/a	0
Chromosome 4	CM029822.1	n/a	n/a	0
Chromosome 5	CM029823.1	n/a	n/a	0
Chromosome 6	CM029824.1	n/a	n/a	0
Chromosome 7	CM029825.1	n/a	n/a	0
Chromosome 8	CM029826.1	n/a	n/a	0
Chromosome 9	CM029827.1	n/a	n/a	0
Chromosome 10	CM029828.1	n/a	n/a	0
Chromosome 11	CM029829.1	n/a	n/a	0
Chromosome 12	CM029830.1	n/a	n/a	0
Chromosome 13	CM029831.1	n/a	n/a	0
Chromosome 14	CM029832.1	n/a	n/a	0
Chromosome 15	CM029833.1	n/a	n/a	0
Chromosome 16	CM029834.1	n/a	n/a	0
Chromosome 17	CM029835.1	n/a	n/a	0
Chromosome 18	CM029836.1	n/a	n/a	0
Chromosome 19	CM029837.1	n/a	n/a	0
Chromosome 20	CM029838.1	n/a	n/a	0
Chromosome 21	CM029839.1	n/a	n/a	0
Chromosome 22	CM029840.1	n/a	n/a	0
Chromosome 23	CM029841.1	n/a	n/a	0
Chromosome 24	CM029842.1	n/a	n/a	0
Chromosome 25	CM029843.1	n/a	n/a	0
Chromosome 26	CM029844.1	n/a	n/a	0
Chromosome X	CM029845.1	n/a	n/a	0
unplaced	n/a	n/a	n/a	31

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	2,653,843,355	58	2,648,935,940	105,184,753	110
Chromosome 1	280,644,136	1	280,303,481	280,644,136	10
Chromosome 2	252,362,713	1	250,791,946	252,362,713	2
Chromosome 3	226,826,216	1	226,485,805	226,826,216	5
Chromosome 4	121,514,229	1	121,500,913	121,514,229	1
Chromosome 5	108,580,084	1	108,580,084	108,580,084	0
Chromosome 6	118,786,809	1	118,786,809	118,786,809	0
Chromosome 7	105,184,753	1	105,135,774	105,184,753	21
Chromosome 8	91,237,811	1	91,237,798	91,237,811	1
Chromosome 9	95,403,819	1	95,403,819	95,403,819	0
Chromosome 10	91,562,662	1	90,179,211	91,562,662	13
Chromosome 11	67,716,071	1	67,713,445	67,716,071	28
Chromosome 12	81,071,312	1	80,923,132	81,071,312	4
Chromosome 13	83,580,535	1	83,580,535	83,580,535	0
Chromosome 14	67,387,920	1	67,375,435	67,387,920	2
Chromosome 15	83,093,940	1	83,093,940	83,093,940	0
Chromosome 16	72,105,115	1	72,105,115	72,105,115	0
Chromosome 17	73,523,957	1	73,523,944	73,523,957	1
Chromosome 18	70,760,168	1	70,292,178	70,760,168	2
Chromosome 19	60,600,000	1	60,600,000	60,600,000	0
Chromosome 20	52,181,980	1	52,181,967	52,181,980	1
Chromosome 21	51,086,750	1	51,040,067	51,086,750	3
Chromosome 22	51,925,645	1	51,925,645	51,925,645	0
Chromosome 23	62,764,803	1	62,764,803	62,764,803	0
Chromosome 24	45,006,986	1	44,948,019	45,006,986	4
Chromosome 25	45,418,129	1	45,219,870	45,418,129	1
Chromosome 26	45,297,346	1	45,297,346	45,297,346	0
Chromosome X	144,257,616	1	143,983,009	144,257,616	11
unplaced	3,961,850	31	3,961,850	173,848	0

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CAU_O.aries_1.0

See Genome Information for Ovis aries

Pathogen Detection Resources

There are 58 assemblies for this organism

History (Show revision history)

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