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ASM1759488v1

Organism name:
Helicobacter pylori (e-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: MX-2017-78
BioSample:
SAMN14206544
BioProject:
PRJNA203445
Submitter:
University of California at Davis
Date:
2021/03/27
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_017594885.1 (latest)
RefSeq assembly accession:
GCF_017594885.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JAALNU01
Assembly method:
SPAdes v. 3.13.0
Expected final version:
no
Genome coverage:
211x
Sequencing technology:
Illumina

IDs: 9656721 [UID] 25832418 [GenBank] 25846178 [RefSeq]

See Genome Information for Helicobacter pylori

There are 4493 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length1,651,292
Total ungapped length1,651,292
Number of contigs48
Contig N50100,011
Contig L507
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)48

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced1,651,292481,651,292100,01100

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Helicobacter pyloriHelicobacter pylori

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000258845.1Helicobacter pylori NCTC 11637 = CCUG 17874 = ATCC 43504 = JCM 12093type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000258845.1Helicobacter pyloritype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type95.3288.9591.77
Best-match type95.3288.9591.77

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna