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ASM1830422v1

Organism name:
Candidatus Pacearchaeota archaeon (archaea)
Taxonomy check:
Inconclusive
Isolate:
RIFOXYB1_FULL_31_12
BioSample:
SAMN18341285
BioProject:
PRJNA288027
Submitter:
Banfield Lab, University of California, Berkeley
Date:
2021/05/07
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Excluded from RefSeq:
  • derived from metagenome
  • genus undefined
GenBank assembly accession:
GCA_018304225.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
JAGVWQ01
Assembly method:
IDBA_UD v. 06.01.2014s
Expected final version:
yes
Genome coverage:
10x
Sequencing technology:
Illumina HiSeq2000

IDs: 10013931 [UID] 26638538 [GenBank]

See Genome Information for Candidatus Pacearchaeota archaeon

There are 283 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::04/30/2021 18:22:30
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::5.1
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::1,005
CDSs (total)::973
Genes (coding)::966
CDSs (with protein)::966
Genes (RNA)::32
rRNAs::1 (5S)
complete rRNAs::1 (5S)
tRNAs::31
ncRNAs::0
Pseudo Genes (total)::7
CDSs (without protein)::7
Pseudo Genes (ambiguous residues)::0 of 7
Pseudo Genes (frameshifted)::4 of 7
Pseudo Genes (incomplete)::2 of 7
Pseudo Genes (internal stop)::1 of 7
##Genome-Annotation-Data-END##

Global statistics

Total sequence length767,500
Total ungapped length767,418
Gaps between scaffolds0
Number of scaffolds54
Scaffold N5016,494
Scaffold L5015
Number of contigs55
Contig N5016,494
Contig L5015
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)54

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced767,50054767,41816,49410

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Candidatus Pacearchaeota archaeonCandidatus Pacearchaeota archaeon

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
none-foundnana

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match typena0.000.00

ANI result

Taxonomy check statusBest match statusComment
Inconclusivenana