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hg01243.v2.5

Organism name:
Homo sapiens (human)
Isolate:
HG01243
Sex:
male
BioSample:
SAMN13957917
BioProject:
PRJNA730525
Submitter:
Johns Hopkins University
Date:
2021/06/14
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_018873775.1 (replaced)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
JAHLSK01
Assembly method:
MaSuRCA v. 3.4.3; Flye v. 2.5
Expected final version:
no
Genome coverage:
282.0x
Sequencing technology:
Illumina NovaSeq; Oxford Nanopore; PacBio Sequel; PacBio HiFi

IDs: 10300911 [UID] 27385408 [GenBank]

See Genome Information for Homo sapiens

There are 1041 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length3,107,485,608
Total ungapped length3,065,894,717
Gaps between scaffolds0
Number of scaffolds92
Scaffold N50150,081,504
Scaffold L509
Number of contigs175
Contig N50154,359,490
Contig L508
Total number of chromosomes and plasmids25
Number of component sequences (WGS or clone)92

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
Assembly Unit: Primary Assembly (GCA_018873785.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1n/an/an/a1
Chromosome 2n/an/an/a1
Chromosome 3n/an/an/a2
Chromosome 4n/an/an/a1
Chromosome 5n/an/an/a1
Chromosome 6n/an/an/a1
Chromosome 7n/an/an/a1
Chromosome 8n/an/an/a1
Chromosome 9n/an/an/a1
Chromosome 10n/an/an/a1
Chromosome 11n/an/an/a1
Chromosome 12n/an/an/a1
Chromosome 13n/an/an/a1
Chromosome 14n/an/an/a1
Chromosome 15n/an/an/a1
Chromosome 16n/an/an/a1
Chromosome 17n/an/an/a1
Chromosome 18n/an/an/a1
Chromosome 19n/an/an/a1
Chromosome 20n/an/an/a1
Chromosome 21n/an/an/a1
Chromosome 22n/an/an/a1
Chromosome Xn/an/an/a1
Chromosome Yn/an/an/a1
unplacedn/an/an/a66

Assembly statistics

MoleculeSequence RoleTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
AllAssembled molecule3,107,469,040913,065,878,149150,081,504830
Chromosome 1AllAssembled moleculeUnlocalized scaffolds248,243,6920248,243,692101248,243,6920248,243,692248,243,6920248,243,692000000
Chromosome 2AllAssembled moleculeUnlocalized scaffolds242,441,5190242,441,519101242,441,5190242,441,519242,441,5190242,441,519000000
Chromosome 3AllAssembled moleculeUnlocalized scaffolds200,674,6160200,674,616202200,674,6160200,674,616200,623,8600200,623,860000000
Chromosome 4AllAssembled moleculeUnlocalized scaffolds193,343,0890193,343,089101193,343,0890193,343,089193,343,0890193,343,089000000
Chromosome 5AllAssembled moleculeUnlocalized scaffolds181,923,9260181,923,926101181,923,9260181,923,926181,923,9260181,923,926000000
Chromosome 6AllAssembled moleculeUnlocalized scaffolds171,764,5810171,764,581101171,764,5810171,764,581171,764,5810171,764,581000000
Chromosome 7AllAssembled moleculeUnlocalized scaffolds160,350,2800160,350,280101160,350,2800160,350,280160,350,2800160,350,280000000
Chromosome 8AllAssembled moleculeUnlocalized scaffolds146,002,1960146,002,196101146,002,1960146,002,196146,002,1960146,002,196000000
Chromosome 9AllAssembled moleculeUnlocalized scaffolds150,081,5040150,081,504101150,081,5040150,081,504150,081,5040150,081,504000000
Chromosome 10AllAssembled moleculeUnlocalized scaffolds134,238,0720134,238,072101134,238,0720134,238,072134,238,0720134,238,072000000
Chromosome 11AllAssembled moleculeUnlocalized scaffolds134,644,8530134,644,853101134,644,8530134,644,853134,644,8530134,644,853000000
Chromosome 12AllAssembled moleculeUnlocalized scaffolds133,390,3350133,390,335101133,390,3350133,390,335133,390,3350133,390,335000000
Chromosome 13AllAssembled moleculeUnlocalized scaffolds114,127,7790114,127,779101110,077,7810110,077,781114,127,7790114,127,779101000
Chromosome 14AllAssembled moleculeUnlocalized scaffolds101,019,8640101,019,864101100,344,8690100,344,869101,019,8640101,019,864101000
Chromosome 15AllAssembled moleculeUnlocalized scaffolds100,174,4970100,174,49710197,474,498097,474,498100,174,4970100,174,497101000
Chromosome 16AllAssembled moleculeUnlocalized scaffolds96,221,913096,221,91310196,221,913096,221,91396,221,913096,221,913000000
Chromosome 17AllAssembled moleculeUnlocalized scaffolds83,931,792083,931,79210183,931,792083,931,79283,931,792083,931,792000000
Chromosome 18AllAssembled moleculeUnlocalized scaffolds80,716,684080,716,68410180,716,684080,716,68480,716,684080,716,684000000
Chromosome 19AllAssembled moleculeUnlocalized scaffolds61,708,235061,708,23510161,708,235061,708,23561,708,235061,708,235000000
Chromosome 20AllAssembled moleculeUnlocalized scaffolds65,906,100065,906,10010165,906,100065,906,10065,906,100065,906,100000000
Chromosome 21AllAssembled moleculeUnlocalized scaffolds45,744,442045,744,44210142,594,449042,594,44945,744,442045,744,442101000
Chromosome 22AllAssembled moleculeUnlocalized scaffolds51,088,152051,088,15210150,188,155050,188,15551,088,152051,088,152101000
Chromosome XAllAssembled moleculeUnlocalized scaffolds154,359,4900154,359,490101154,359,4900154,359,490154,359,4900154,359,490000000
Chromosome YAllAssembled moleculeUnlocalized scaffolds54,257,118054,257,11810124,141,209024,141,20954,257,118054,257,11878078000
unplacedAssembled molecule1,114,311661,114,31189,39800
MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
Mitochondrion MT16,568116,56816,56800
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