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Bf-hap

Organism name:
Branchiostoma floridae x Branchiostoma belcheri (lancelets)
Isolate:
bbbf
BioSample:
SAMN13907882
BioProject:
PRJNA706156
Submitter:
University of Vienna
Date:
2021/07/13
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_019207045.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
JAFMNZ01
Assembly method:
Canu v. 1.7.1
Expected final version:
no
Genome coverage:
42x
Sequencing technology:
PacBio Sequel

IDs: 10489901 [UID] 27844838 [GenBank]

See Genome Information for Branchiostoma floridae x Branchiostoma belcheri

Pathogen Detection Resources

There are 3 assemblies for this organism

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History (Show revision history)

Comment

This is a lab-generated F1 cross between Branchiostoma floridae x Branchiostoma belcheri for which parental haplotypes were determined. The principal haplotype in JAFMNY000000000 represents the Branchiostoma belcheri genome which contains 20 chromosomes while the alternative haplotype in JAFMNZ000000000 represents ... the Branchiostoma floridae genome which only contains 19 chromosomes due to a chromosome pair fusion. Note the chromosomes were named according to chromosome size, not homology.  more

Global statistics

Total sequence length490,439,570
Total ungapped length490,003,673
Gaps between scaffolds0
Number of scaffolds98
Scaffold N5025,499,959
Scaffold L509
Number of contigs298
Contig N505,730,782
Contig L5027
Total number of chromosomes and plasmids19
Number of component sequences (WGS or clone)98

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCA_019207095.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM033023.1n/an/a0
Chromosome 2CM033024.1n/an/a0
Chromosome 3CM033025.1n/an/a0
Chromosome 4CM033026.1n/an/a0
Chromosome 5CM033027.1n/an/a0
Chromosome 6CM033028.1n/an/a0
Chromosome 7CM033029.1n/an/a0
Chromosome 8CM033030.1n/an/a0
Chromosome 9CM033031.1n/an/a0
Chromosome 10CM033032.1n/an/a0
Chromosome 11CM033033.1n/an/a0
Chromosome 12CM033034.1n/an/a0
Chromosome 13CM033035.1n/an/a0
Chromosome 14CM033036.1n/an/a0
Chromosome 15CM033037.1n/an/a0
Chromosome 16CM033038.1n/an/a0
Chromosome 17CM033039.1n/an/a0
Chromosome 18CM033040.1n/an/a0
Chromosome 19CM033041.1n/an/a0
unplacedn/an/an/a79

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
All490,439,57098490,003,67325,499,9592000
Chromosome 134,468,412134,444,64334,468,412120
Chromosome 234,191,173134,150,03234,191,173200
Chromosome 333,800,684133,779,68433,800,68490
Chromosome 433,570,470133,543,07333,570,470140
Chromosome 528,102,100128,080,86028,102,100110
Chromosome 626,660,874126,639,57926,660,874110
Chromosome 726,152,720126,139,72026,152,72050
Chromosome 825,936,336125,922,52325,936,33670
Chromosome 925,499,959125,471,36525,499,959100
Chromosome 1023,658,886123,640,07923,658,88680
Chromosome 1123,071,646123,053,64623,071,64690
Chromosome 1222,823,554122,803,29922,823,55490
Chromosome 1322,713,823122,699,94522,713,82370
Chromosome 1422,542,094122,520,37822,542,094100
Chromosome 1521,560,498121,533,39521,560,498110
Chromosome 1621,486,966121,473,96621,486,96650
Chromosome 1720,878,073120,869,18420,878,07350
Chromosome 1818,474,479118,462,47918,474,47960
Chromosome 1918,409,002118,407,00218,409,00210
unplaced6,437,821796,368,82178,343300