U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



ASM2018471v1

Organism name:
Danio rerio (zebrafish)
Infraspecific name:
Strain: AB
BioSample:
SAMN19519142
BioProject:
PRJNA734711
Submitter:
Institute of Hydrobiology, Chinese Academy of Sciences
Date:
2021/09/30
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_020184715.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
JAHVXS01
Assembly method:
Nextdenovo v. 2.3
Expected final version:
yes
Genome coverage:
190.0x
Sequencing technology:
Oxford Nanopore GridION

IDs: 11026991 [UID] 29146318 [GenBank]

See Genome Information for Danio rerio

There are 18 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length1,401,249,944
Total ungapped length1,401,236,744
Gaps between scaffolds0
Number of scaffolds33
Scaffold N5057,786,111
Scaffold L5011
Number of contigs165
Contig N5021,088,021
Contig L5022
Total number of chromosomes and plasmids25
Number of component sequences (WGS or clone)33

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCA_020184735.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM035055.1n/an/a0
Chromosome 2CM035056.1n/an/a0
Chromosome 3CM035057.1n/an/a0
Chromosome 4CM035058.1n/an/a0
Chromosome 5CM035059.1n/an/a0
Chromosome 6CM035060.1n/an/a0
Chromosome 7CM035061.1n/an/a0
Chromosome 8CM035062.1n/an/a0
Chromosome 9CM035063.1n/an/a0
Chromosome 10CM035064.1n/an/a0
Chromosome 11CM035065.1n/an/a0
Chromosome 12CM035066.1n/an/a0
Chromosome 13CM035067.1n/an/a0
Chromosome 14CM035068.1n/an/a0
Chromosome 15CM035069.1n/an/a0
Chromosome 16CM035070.1n/an/a0
Chromosome 17CM035071.1n/an/a0
Chromosome 18CM035072.1n/an/a0
Chromosome 19CM035073.1n/an/a0
Chromosome 20CM035074.1n/an/a0
Chromosome 21CM035075.1n/an/a0
Chromosome 22CM035076.1n/an/a0
Chromosome 23CM035077.1n/an/a0
Chromosome 24CM035078.1n/an/a0
Chromosome 25CM035079.1n/an/a0
unplacedn/an/an/a8

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
All1,401,249,944331,401,236,74457,786,1111320
Chromosome 164,076,721164,075,92164,076,72180
Chromosome 264,389,464164,388,96464,389,46450
Chromosome 358,814,869158,814,06958,814,86980
Chromosome 445,249,806145,249,30645,249,80650
Chromosome 578,491,709178,490,60978,491,709110
Chromosome 663,463,076163,462,67663,463,07640
Chromosome 778,830,602178,829,60278,830,602100
Chromosome 862,896,458162,895,25862,896,458120
Chromosome 958,863,916158,863,81658,863,91610
Chromosome 1048,349,772148,349,37248,349,77240
Chromosome 1148,869,238148,868,73848,869,23850
Chromosome 1251,164,717151,164,61751,164,71710
Chromosome 1356,616,303156,615,40356,616,30390
Chromosome 1458,570,601158,570,20158,570,60140
Chromosome 1552,658,209152,657,40952,658,20980
Chromosome 1657,786,111157,785,91157,786,11120
Chromosome 1757,010,606157,010,20657,010,60640
Chromosome 1854,759,626154,759,52654,759,62610
Chromosome 1950,938,646150,938,54650,938,64610
Chromosome 2058,653,421158,653,02158,653,42140
Chromosome 2149,779,501149,779,20149,779,50130
Chromosome 2244,429,915144,429,11544,429,91580
Chromosome 2349,457,760149,457,36049,457,76040
Chromosome 2443,862,188143,861,98843,862,18820
Chromosome 2541,661,998141,661,19841,661,99880
unplaced1,604,71181,604,711217,14400