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PGP1v1

Organism name:
Homo sapiens (human)
Isolate:
PGP1
Sex:
male
BioSample:
SAMN19546685
BioProject:
PRJNA734849
Submitter:
Ulsan National Institute of Science and Technology
Date:
2021/10/14
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_020497115.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
JAHRGN01
Assembly method:
Flye assembler v. 2.5
Expected final version:
no
Genome coverage:
85.0x
Sequencing technology:
Oxford Nanopore PromethION; PacBio Sequel II HiFi; Illumina NovaSeq

IDs: 11215711 [UID] 29568308 [GenBank]

See Genome Information for Homo sapiens

There are 1094 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length3,016,802,955
Total ungapped length3,015,733,187
Gaps between scaffolds0
Number of scaffolds3,880
Scaffold N50141,933,136
Scaffold L509
Number of contigs5,816
Contig N5024,698,710
Contig L5037
Total number of chromosomes and plasmids24
Number of component sequences (WGS or clone)3,880

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCA_020497145.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM035659.1n/an/a0
Chromosome 2CM035660.1n/an/a0
Chromosome 3CM035661.1n/an/a0
Chromosome 4CM035662.1n/an/a0
Chromosome 5CM035663.1n/an/a0
Chromosome 6CM035664.1n/an/a0
Chromosome 7CM035665.1n/an/a0
Chromosome 8CM035666.1n/an/a0
Chromosome 9CM035667.1n/an/a0
Chromosome 10CM035668.1n/an/a0
Chromosome 11CM035669.1n/an/a0
Chromosome 12CM035670.1n/an/a0
Chromosome 13CM035671.1n/an/a0
Chromosome 14CM035672.1n/an/a0
Chromosome 15CM035673.1n/an/a0
Chromosome 16CM035674.1n/an/a0
Chromosome 17CM035675.1n/an/a0
Chromosome 18CM035676.1n/an/a0
Chromosome 19CM035677.1n/an/a0
Chromosome 20CM035678.1n/an/a0
Chromosome 21CM035679.1n/an/a0
Chromosome 22CM035680.1n/an/a0
Chromosome XCM035681.1n/an/a0
Chromosome YCM035682.1n/an/a0
unplacedn/an/an/a3,856

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
All3,016,802,9553,8803,015,733,187141,933,1361,9360
Chromosome 1221,630,5301221,581,230221,630,530800
Chromosome 2236,082,5401236,039,009236,082,540820
Chromosome 3194,731,0671194,719,350194,731,067120
Chromosome 4186,503,5751186,498,075186,503,575110
Chromosome 5176,642,3621176,610,968176,642,362420
Chromosome 6169,004,8481168,987,729169,004,848320
Chromosome 7156,322,0941156,254,784156,322,094950
Chromosome 8141,933,1361141,916,136141,933,136340
Chromosome 9112,888,5181112,851,297112,888,518610
Chromosome 10130,815,6311130,791,131130,815,631490
Chromosome 11131,474,3441131,450,247131,474,344270
Chromosome 12131,356,0131131,345,024131,356,013200
Chromosome 1397,592,272197,580,27297,592,272240
Chromosome 1487,076,209187,073,70987,076,20950
Chromosome 1580,560,047180,517,15980,560,047580
Chromosome 1678,827,327178,790,75978,827,327670
Chromosome 1779,588,198179,555,22779,588,198470
Chromosome 1873,507,479173,506,97973,507,47910
Chromosome 1955,865,652155,858,15255,865,652150
Chromosome 2062,149,448162,143,44862,149,448120
Chromosome 2132,723,799132,722,79932,723,79920
Chromosome 2242,264,218142,218,89942,264,218760
Chromosome X153,174,1501153,121,964153,174,1501050
Chromosome Y16,535,105116,522,24116,535,105260
unplaced167,554,3933,856167,076,599105,1429530