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sHemOce1.pat.X.cur.

Organism name:
Hemiscyllium ocellatum (epaulette shark)
Isolate:
sHemOce1
Sex:
male
BioSample:
SAMN22550098
BioProject:
PRJNA774310
Submitter:
Vertebrate Genomes Project
Date:
2021/11/05
Assembly type:
haploid (principal pseudohaplotype of diploid)
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_020745735.1 (latest)
RefSeq assembly accession:
GCF_020745735.1 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in GenBank: chromosome MT
  • Data displayed for RefSeq version
WGS Project:
JAJGRY01
Assembly method:
TrioCanu v. 2.1; purge_dups v. 1.2.5; Scaff 10x v. 4.2; Bionano Solve v. 3.6.1_11162020; Salsa2 HiC v. 2.2; variantCaller v. 2.3.3; Longranger Align v. 2.2.2; Freebayes v. 1.3; gEVAL manual curation v. 2021-05-28; VGP Pipeline v. 1.6
Expected final version:
no
Genome coverage:
148.57x
Sequencing technology:
PacBio Sequel II CLR; Illumina NovaSeq; Bionano Genomics DLS; Arima Genomics Hi-C v1
Linked assembly:
GCA_020745765.1 (alternate pseudohaplotype of diploid)

IDs: 11379991 [UID] 29961978 [GenBank] 49505538 [RefSeq]

See Genome Information for Hemiscyllium ocellatum

Pathogen Detection Resources

There are 2 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length3,983,466,396
Total ungapped length3,905,901,794
Gaps between scaffolds0
Number of scaffolds1,962
Scaffold N5083,580,160
Scaffold L5017
Number of contigs5,666
Contig N508,845,575
Contig L5092
Total number of chromosomes and plasmids54
Number of component sequences (WGS or clone)1,962

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_020746075.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM036659.1=NC_083401.10
Chromosome 2CM036660.1=NC_083402.10
Chromosome 3CM036661.1=NC_083403.10
Chromosome 4CM036662.1=NC_083404.10
Chromosome 5CM036663.1=NC_083405.10
Chromosome 6CM036664.1=NC_083406.10
Chromosome 7CM036665.1=NC_083407.10
Chromosome 8CM036666.1=NC_083408.10
Chromosome 9CM036667.1=NC_083409.14
Chromosome 10CM036668.1=NC_083410.10
Chromosome 11CM036669.1=NC_083411.10
Chromosome 12CM036670.1=NC_083412.10
Chromosome 13CM036671.1=NC_083413.10
Chromosome 14CM036672.1=NC_083414.10
Chromosome 15CM036673.1=NC_083415.129
Chromosome 16CM036674.1=NC_083416.10
Chromosome 17CM036675.1=NC_083417.12
Chromosome 18CM036676.1=NC_083418.10
Chromosome 19CM036677.1=NC_083419.10
Chromosome 20CM036678.1=NC_083420.10
Chromosome 21CM036679.1=NC_083421.10
Chromosome 22CM036680.1=NC_083422.10
Chromosome 23CM036681.1=NC_083423.10
Chromosome 24CM036682.1=NC_083424.10
Chromosome 25CM036683.1=NC_083425.10
Chromosome 26CM036684.1=NC_083426.10
Chromosome 27CM036685.1=NC_083427.143
Chromosome 28CM036686.1=NC_083428.10
Chromosome 29CM036687.1=NC_083429.10
Chromosome 30CM036688.1=NC_083430.10
Chromosome 31CM036689.1=NC_083431.10
Chromosome 32CM036690.1=NC_083432.10
Chromosome 33CM036691.1=NC_083433.10
Chromosome 34CM036692.1=NC_083434.10
Chromosome 35CM036693.1=NC_083435.10
Chromosome 36CM036694.1=NC_083436.10
Chromosome 37CM036695.1=NC_083437.10
Chromosome 38CM036696.1=NC_083438.17
Chromosome 39CM036697.1=NC_083439.10
Chromosome 40CM036698.1=NC_083440.112
Chromosome 41CM036699.1=NC_083441.142
Chromosome 42CM036700.1=NC_083442.10
Chromosome 43CM036701.1=NC_083443.12
Chromosome 44CM036702.1=NC_083444.12
Chromosome 45CM036703.1=NC_083445.10
Chromosome 46CM036704.1=NC_083446.10
Chromosome 47CM036705.1=NC_083447.10
Chromosome 48CM036706.1=NC_083448.10
Chromosome 49CM036707.1=NC_083449.10
Chromosome 50CM036708.1=NC_083450.14
Chromosome 51CM036709.1=NC_083451.10
Chromosome 52CM036710.1=NC_083452.10
Chromosome XCM036711.1=NC_083453.112
Chromosome YCM036712.1=NC_083454.12
unplacedn/an/an/a1,747

Assembly statistics

MoleculeSequence RoleTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
AllAssembled molecule3,983,466,3961,9623,905,901,79483,580,1603,7040
Chromosome 1Assembled molecule167,561,9091167,321,923167,561,909430
Chromosome 2Assembled molecule153,571,8461153,375,820153,571,846280
Chromosome 3Assembled molecule145,860,1081145,577,279145,860,108360
Chromosome 4Assembled molecule144,051,9711143,924,308144,051,971290
Chromosome 5Assembled molecule142,788,8491140,305,165142,788,849600
Chromosome 6Assembled molecule126,695,6861126,326,775126,695,686190
Chromosome 7Assembled molecule123,165,1841122,741,957123,165,184340
Chromosome 8Assembled molecule120,500,3391119,944,635120,500,339460
Chromosome 9AllAssembled moleculeUnlocalized scaffolds118,226,717116,467,4241,759,293514116,237,187114,855,5561,381,631116,467,424116,467,424438,06895887000
Chromosome 10Assembled molecule114,672,3701114,131,738114,672,370450
Chromosome 11Assembled molecule103,723,4591101,150,962103,723,4591350
Chromosome 12Assembled molecule103,478,9651102,504,822103,478,965460
Chromosome 13Assembled molecule99,693,986198,877,80299,693,986450
Chromosome 14Assembled molecule89,976,179188,238,21389,976,179740
Chromosome 15AllAssembled moleculeUnlocalized scaffolds88,901,85669,721,97819,179,8783012984,931,64569,448,12715,483,51869,721,97869,721,978664,4151112685000
Chromosome 16Assembled molecule87,762,412187,548,38287,762,412160
Chromosome 17AllAssembled moleculeUnlocalized scaffolds87,391,39684,986,8312,404,56531286,392,90384,519,2781,873,62584,986,83184,986,8311,302,496463511000
Chromosome 18Assembled molecule83,580,160183,283,35183,580,160220
Chromosome 19Assembled molecule80,172,487179,705,00980,172,487290
Chromosome 20Assembled molecule77,265,034176,587,73077,265,034350
Chromosome 21Assembled molecule67,258,902166,676,06067,258,902640
Chromosome 22Assembled molecule63,229,458163,228,26363,229,45880
Chromosome 23Assembled molecule62,342,579161,895,66062,342,579180
Chromosome 24Assembled molecule60,358,015160,219,92560,358,015250
Chromosome 25Assembled molecule58,880,046158,664,38958,880,046100
Chromosome 26Assembled molecule58,719,586158,616,04958,719,586110
Chromosome 27AllAssembled moleculeUnlocalized scaffolds57,680,26516,743,45140,936,8144414354,517,61016,412,82738,104,7833,070,71816,743,4511,100,47517117154000
Chromosome 28Assembled molecule57,096,750156,383,01257,096,750460
Chromosome 29Assembled molecule57,068,925156,245,04357,068,925510
Chromosome 30Assembled molecule55,856,321155,664,71355,856,32190
Chromosome 31Assembled molecule55,848,022155,537,37155,848,022240
Chromosome 32Assembled molecule52,215,567151,439,30852,215,567240
Chromosome 33Assembled molecule50,073,909148,871,20850,073,909960
Chromosome 34Assembled molecule49,361,406149,233,50149,361,406110
Chromosome 35Assembled molecule49,326,738148,696,64549,326,738550
Chromosome 36Assembled molecule47,890,427147,437,48547,890,42790
Chromosome 37Assembled molecule46,837,624146,727,59046,837,624150
Chromosome 38AllAssembled moleculeUnlocalized scaffolds45,532,26840,247,7645,284,50481742,591,69737,597,2154,994,48240,247,76440,247,764987,41815112130000
Chromosome 39Assembled molecule43,139,937142,858,56343,139,937230
Chromosome 40AllAssembled moleculeUnlocalized scaffolds40,076,71033,209,7206,866,9901311238,254,69431,701,8216,552,87333,209,72033,209,720623,595956728000
Chromosome 41AllAssembled moleculeUnlocalized scaffolds37,629,5156,993,69530,635,8204314235,867,5036,961,86428,905,6391,095,1386,993,695975,91713014116000
Chromosome 42Assembled molecule37,317,426137,072,95737,317,426320
Chromosome 43AllAssembled moleculeUnlocalized scaffolds37,299,12936,819,386479,74331237,078,41136,599,762478,64936,819,38636,819,386240,24833303000
Chromosome 44AllAssembled moleculeUnlocalized scaffolds34,824,27934,462,783361,49631233,083,07932,722,183360,89634,462,78334,462,783204,83884822000
Chromosome 45Assembled molecule33,323,899131,945,82533,323,899470
Chromosome 46Assembled molecule31,775,219130,941,38731,775,219470
Chromosome 47Assembled molecule30,038,769129,408,84730,038,769300
Chromosome 48Assembled molecule22,250,077122,170,26122,250,077180
Chromosome 49Assembled molecule16,212,550114,498,11816,212,550280
Chromosome 50AllAssembled moleculeUnlocalized scaffolds12,946,46611,707,5621,238,90451412,787,35311,549,4471,237,90611,707,56211,707,562342,75742402000
Chromosome 51Assembled molecule10,295,83218,126,23810,295,832220
Chromosome 52Assembled molecule317,3511316,951317,35120
Chromosome XAllAssembled moleculeUnlocalized scaffolds26,197,51323,638,7522,558,7611311226,039,06023,485,3812,553,67923,638,75223,638,752238,950322111000
Chromosome YAllAssembled moleculeUnlocalized scaffolds5,289,1043,922,3131,366,7913125,122,6573,757,9641,364,6933,922,3133,922,313945,84520155000
unplacedAssembled molecule309,914,8991,747278,576,755547,9931,2270