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ASM2115755v1

Organism name:
Deltaproteobacteria bacterium (bacteria)
Taxonomy check:
Inconclusive
Isolate:
AUK125
BioSample:
SAMN18353621
BioProject:
PRJNA713414
Submitter:
California Institute of Technology
Date:
2021/12/10
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Excluded from RefSeq:
  • derived from metagenome
  • genus undefined
GenBank assembly accession:
GCA_021157555.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
JAGGWL01
Assembly method:
MEGAHIT v. 1.2.9
Expected final version:
yes
Genome coverage:
19.84x
Sequencing technology:
Illumina HiSeq

IDs: 11600431 [UID] 30549598 [GenBank]

See Genome Information for Deltaproteobacteria bacterium

There are 2561 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::03/28/2021 01:26:26
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::5.1
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::2,440
CDSs (total)::2,397
Genes (coding)::2,351
CDSs (with protein)::2,351
Genes (RNA)::43
tRNAs::39
ncRNAs::4
Pseudo Genes (total)::46
CDSs (without protein)::46
Pseudo Genes (ambiguous residues)::0 of 46
Pseudo Genes (frameshifted)::23 of 46
Pseudo Genes (incomplete)::20 of 46
Pseudo Genes (internal stop)::10 of 46
Pseudo Genes (multiple problems)::6 of 46
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,378,290
Total ungapped length2,378,290
Number of contigs377
Contig N507,408
Contig L5095
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)377

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,378,2903772,378,2907,40800

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Deltaproteobacteria bacteriumDeltaproteobacteria bacterium

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
none-foundnana

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match typena0.000.00

ANI result

Taxonomy check statusBest match statusComment
Inconclusivenana