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ASM2116004v1

Organism name:
Candidatus Atribacteria bacterium (bacteria)
Taxonomy check:
Inconclusive
Isolate:
AUK303
BioSample:
SAMN18353799
BioProject:
PRJNA713414
Submitter:
California Institute of Technology
Date:
2021/12/10
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Excluded from RefSeq:
  • derived from metagenome
  • fragmented assembly
  • genus undefined
GenBank assembly accession:
GCA_021160045.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
JAGHDH01
Assembly method:
MEGAHIT v. 1.2.9
Expected final version:
yes
Genome coverage:
5.52x
Sequencing technology:
Illumina HiSeq

IDs: 11601791 [UID] 30552098 [GenBank]

See Genome Information for Candidatus Atribacteria bacterium

There are 97 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::03/28/2021 03:14:52
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::5.1
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::1,362
CDSs (total)::1,338
Genes (coding)::1,306
CDSs (with protein)::1,306
Genes (RNA)::24
rRNAs::1, 1 (5S, 23S)
complete rRNAs::1 (5S)
partial rRNAs::1 (23S)
tRNAs::22
ncRNAs::0
Pseudo Genes (total)::32
CDSs (without protein)::32
Pseudo Genes (ambiguous residues)::0 of 32
Pseudo Genes (frameshifted)::20 of 32
Pseudo Genes (incomplete)::12 of 32
Pseudo Genes (internal stop)::7 of 32
Pseudo Genes (multiple problems)::7 of 32
##Genome-Annotation-Data-END##

Global statistics

Total sequence length1,166,626
Total ungapped length1,166,626
Number of contigs252
Contig N504,795
Contig L5087
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)252

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced1,166,6262521,166,6264,79500

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Candidatus Atribacteria bacteriumCandidatus Atribacteria bacterium

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
none-foundnana

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match typena0.000.00

ANI result

Taxonomy check statusBest match statusComment
Inconclusivenana