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Source database (GenBank or RefSeq) File type

ASM2116337v1

Organism name:

Nitrososphaerota archaeon (archaea)

Taxonomy check:

Inconclusive

Isolate:

AUK135

BioSample:

SAMN18353631

BioProject:

PRJNA713414

Submitter:

California Institute of Technology

Date:

2021/12/10

Assembly type:

Assembly level:

Contig

Genome representation:

full

Excluded from RefSeq:

derived from metagenome
genus undefined

GenBank assembly accession:

GCA_021163375.1 (latest)

RefSeq assembly accession:

n/a

RefSeq assembly and GenBank assembly identical:

n/a

WGS Project:

JAGGWV01

Assembly method:

MEGAHIT v. 1.2.9

Expected final version:

yes

Genome coverage:

18.67x

Sequencing technology:

Illumina HiSeq

IDs: 11603491 [UID] 30555438 [GenBank]

See Genome Information for Nitrososphaerota archaeon

Pathogen Detection Resources

There are 524 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_021163375.1	n/a	n/a	ASM2116337v1	Contig	Latest GenBank

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI
Annotation Date::03/28/2021 00:49:34
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::5.1
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::1,638
CDSs (total)::1,593
Genes (coding)::1,585
CDSs (with protein)::1,585
Genes (RNA)::45
rRNAs::1, 1 (5S, 23S)
complete rRNAs::1 (5S)
partial rRNAs::1 (23S)
tRNAs::41
ncRNAs::2
Pseudo Genes (total)::8
CDSs (without protein)::8
Pseudo Genes (ambiguous residues)::0 of 8
Pseudo Genes (frameshifted)::3 of 8
Pseudo Genes (incomplete)::5 of 8
Pseudo Genes (internal stop)::1 of 8
Pseudo Genes (multiple problems)::1 of 8
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	1,390,046
Total ungapped length	1,390,046
Number of contigs	199
Contig N50	8,431
Contig L50	52
Total number of chromosomes and plasmids	0
Number of component sequences (WGS or clone)	199

	ANI	Query coverage	Subject coverage
Declared type	na	na	na
Best-match type	88.65	0.03	0.03

Assembly

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ASM2116337v1

See Genome Information for Nitrososphaerota archaeon

Pathogen Detection Resources

There are 524 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

Global statistics

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Taxonomy Check Data

Declared organism

Best-matching type-strain assembly for declared species

Best-matching type-strain assembly

Average Nucleotide Identity (ANI) data

ANI result