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ASM2116369v1

Organism name:
Thermotogaceae bacterium (thermotogales)
Taxonomy check:
Inconclusive
Isolate:
AUK051
BioSample:
SAMN18353547
BioProject:
PRJNA713414
Submitter:
California Institute of Technology
Date:
2021/12/10
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Excluded from RefSeq:
  • derived from metagenome
  • genus undefined
GenBank assembly accession:
GCA_021163695.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
JAGGTP01
Assembly method:
MEGAHIT v. 1.2.9
Expected final version:
yes
Genome coverage:
73.90x
Sequencing technology:
Illumina HiSeq

IDs: 11603651 [UID] 30555768 [GenBank]

See Genome Information for Thermotogaceae bacterium

There are 25 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::03/27/2021 22:21:27
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::5.1
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::1,774
CDSs (total)::1,739
Genes (coding)::1,725
CDSs (with protein)::1,725
Genes (RNA)::35
rRNAs::1 (16S)
partial rRNAs::1 (16S)
tRNAs::32
ncRNAs::2
Pseudo Genes (total)::14
CDSs (without protein)::14
Pseudo Genes (ambiguous residues)::0 of 14
Pseudo Genes (frameshifted)::5 of 14
Pseudo Genes (incomplete)::7 of 14
Pseudo Genes (internal stop)::3 of 14
Pseudo Genes (multiple problems)::1 of 14
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length1,619,584
Total ungapped length1,619,584
Number of contigs233
Contig N508,429
Contig L5053
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)233

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced1,619,5842331,619,5848,42900

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Thermotogaceae bacteriumThermotogaceae bacterium

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000008545.1Thermotoga maritimatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type79.030.340.30

ANI result

Taxonomy check statusBest match statusComment
Inconclusivelow-coveragena