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ASM2140524v1

Organism name:
Nitrospira sp. NTP2 (bacteria)
Taxonomy check:
Inconclusive
Isolate:
NTP2
BioSample:
SAMN09768165
BioProject:
PRJNA484723
Submitter:
Peking University
Date:
2022/01/10
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Excluded from RefSeq:
  • derived from metagenome
GenBank assembly accession:
GCA_021405245.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
QWID01
Assembly method:
IDBA-UD v. 1.1.1; MetaBAT v. 0.32.5
Expected final version:
no
Genome coverage:
10x
Sequencing technology:
Illumina HiSeq

IDs: 11725731 [UID] 30864408 [GenBank]

See Genome Information for Nitrospira sp. NTP2

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Date::08/28/2018 14:06:33
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Provider::NCBI
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Annotation Software revision::4.6
Genes (total)::3,472
CDS (total)::3,423
Genes (coding)::3,361
CDS (coding)::3,361
Genes (RNA)::49
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1 (5S)
partial rRNAs::1, 1 (16S, 23S)
tRNAs::44
ncRNAs::2
Pseudo Genes (total)::62
Pseudo Genes (ambiguous residues)::0 of 62
Pseudo Genes (frameshifted)::25 of 62
Pseudo Genes (incomplete)::42 of 62
Pseudo Genes (internal stop)::8 of 62
Pseudo Genes (multiple problems)::11 of 62
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,620,328
Total ungapped length3,620,328
Number of contigs55
Contig N50121,534
Contig L5011
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)55

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,620,328553,620,328121,53400

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Nitrospira sp. NTP2Nitrospira sp. NTP2

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_013414645.1Candidatus Parvibacillus calidussuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type99.241.321.22

ANI result

Taxonomy check statusBest match statusComment
Inconclusivelow-coveragena