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HG002.pat.cur.20211005

Organism name:
Homo sapiens (human)
Isolate:
NA24385
Sex:
male
BioSample:
SAMN03283347
BioProject:
PRJNA794172
Submitter:
Human Pangenome Reference Consortium
Date:
2022/02/04
Assembly type:
alternate-pseudohaplotype
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_021950905.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
JAKCWS01
Assembly method:
Hifiasm v. 0.14.1
Expected final version:
no
Genome coverage:
160.0x
Sequencing technology:
PacBio Sequel
Linked assembly:
GCA_021951015.1 (principal pseudohaplotype of diploid)

IDs: 11968861 [UID] 31499718 [GenBank]

See Genome Information for Homo sapiens

There are 1082 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length2,959,277,077
Total ungapped length2,958,310,342
Gaps between scaffolds0
Number of scaffolds514
Scaffold N50146,747,882
Scaffold L508
Number of contigs631
Contig N5084,927,121
Contig L5014
Total number of chromosomes and plasmids23
Number of component sequences (WGS or clone)514

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCA_021952315.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM039034.1n/an/a0
Chromosome 2CM039035.1n/an/a0
Chromosome 3CM039036.1n/an/a5
Chromosome 4CM039037.1n/an/a0
Chromosome 5CM039038.1n/an/a13
Chromosome 6CM039039.1n/an/a15
Chromosome 7CM039040.1n/an/a0
Chromosome 8CM039041.1n/an/a0
Chromosome 9CM039042.1n/an/a2
Chromosome 10CM039043.1n/an/a0
Chromosome 11CM039044.1n/an/a0
Chromosome 12CM039045.1n/an/a0
Chromosome 13CM039046.1n/an/a0
Chromosome 14CM039047.1n/an/a0
Chromosome 15CM039048.1n/an/a0
Chromosome 16CM039049.1n/an/a4
Chromosome 17CM039050.1n/an/a7
Chromosome 18CM039051.1n/an/a5
Chromosome 19CM039052.1n/an/a0
Chromosome 20CM039053.1n/an/a0
Chromosome 21CM039054.1n/an/a0
Chromosome 22CM039055.1n/an/a0
Chromosome YCM039056.1n/an/a22
unplacedn/an/an/a418

Assembly statistics

MoleculeSequence RoleTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
AllAssembled molecule2,959,277,0775142,958,310,342146,747,8821170
Chromosome 1Assembled molecule252,114,7451252,113,997252,114,74540
Chromosome 2Assembled molecule242,054,8561242,051,871242,054,85670
Chromosome 3AllAssembled moleculeUnlocalized scaffolds200,867,546199,186,2281,681,318615200,867,146199,185,8281,681,318199,186,228199,186,228450,686220000
Chromosome 4Assembled molecule192,250,3091192,249,809192,250,30910
Chromosome 5AllAssembled moleculeUnlocalized scaffolds186,719,697182,574,1784,145,51914113186,718,984182,573,4654,145,519182,574,178182,574,178533,317660000
Chromosome 6AllAssembled moleculeUnlocalized scaffolds176,574,031172,635,7433,938,28816115176,573,631172,635,3433,938,288172,635,743172,635,743292,394220000
Chromosome 7Assembled molecule159,878,5891159,878,050159,878,58960
Chromosome 8Assembled molecule146,747,8821146,726,853146,747,88260
Chromosome 9AllAssembled moleculeUnlocalized scaffolds144,683,554143,797,991885,563312144,682,454143,796,891885,563143,797,991143,797,991512,544440000
Chromosome 10Assembled molecule138,952,7561138,952,056138,952,75640
Chromosome 11Assembled molecule133,781,6761133,781,163133,781,67620
Chromosome 12Assembled molecule133,595,0001133,594,500133,595,00010
Chromosome 13Assembled molecule111,502,8641111,501,951111,502,86440
Chromosome 14Assembled molecule98,510,794198,277,30098,510,79490
Chromosome 15Assembled molecule90,339,852190,277,69590,339,85260
Chromosome 16AllAssembled moleculeUnlocalized scaffolds93,472,64390,453,2103,019,43351493,471,53090,452,0973,019,43390,453,21090,453,210837,549550000
Chromosome 17AllAssembled moleculeUnlocalized scaffolds84,944,18782,545,5142,398,67381784,896,96082,498,2872,398,67382,545,51482,545,514423,967440000
Chromosome 18AllAssembled moleculeUnlocalized scaffolds80,680,08478,934,4851,745,59961580,679,88478,934,2851,745,59978,934,48578,934,485471,801110000
Chromosome 19Assembled molecule61,160,173161,156,32761,160,17330
Chromosome 20Assembled molecule66,421,192166,420,87966,421,19230
Chromosome 21Assembled molecule34,296,955134,296,95534,296,95500
Chromosome 22Assembled molecule40,413,461140,413,46140,413,46100
Chromosome YAllAssembled moleculeUnlocalized scaffolds53,915,05446,419,5917,495,4632312253,911,82146,416,3587,495,46346,419,59146,419,591551,62919190000
unplacedAssembled molecule35,399,17741834,815,065193,009180
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