U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



HG002.mat.cur.20211005

Organism name:
Homo sapiens (human)
Isolate:
NA24385
Sex:
male
BioSample:
SAMN03283347
BioProject:
PRJNA794175
Submitter:
Human Pangenome Reference Consortium
Date:
2022/02/04
Assembly type:
haploid (principal pseudohaplotype of diploid)
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_021951015.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
JAKCWR01
Assembly method:
Hifiasm v. 0.14.1
Expected final version:
no
Genome coverage:
160.0x
Sequencing technology:
PacBio Sequel
Linked assembly:
GCA_021950905.1 (alternate pseudohaplotype of diploid)

IDs: 11968871 [UID] 31499808 [GenBank]

See Genome Information for Homo sapiens

There are 1082 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length3,061,735,012
Total ungapped length3,060,224,934
Gaps between scaffolds0
Number of scaffolds355
Scaffold N50154,412,560
Scaffold L508
Number of contigs464
Contig N5062,879,740
Contig L5015
Total number of chromosomes and plasmids23
Number of component sequences (WGS or clone)355

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCA_021951845.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM039011.1n/an/a5
Chromosome 2CM039012.1n/an/a0
Chromosome 3CM039013.1n/an/a4
Chromosome 4CM039014.1n/an/a0
Chromosome 5CM039015.1n/an/a0
Chromosome 6CM039016.1n/an/a15
Chromosome 7CM039017.1n/an/a0
Chromosome 8CM039018.1n/an/a0
Chromosome 9CM039019.1n/an/a4
Chromosome 10CM039020.1n/an/a0
Chromosome 11CM039021.1n/an/a0
Chromosome 12CM039022.1n/an/a0
Chromosome 13CM039023.1n/an/a7
Chromosome 14CM039024.1n/an/a1
Chromosome 15CM039025.1n/an/a0
Chromosome 16CM039026.1n/an/a0
Chromosome 17CM039027.1n/an/a6
Chromosome 18CM039028.1n/an/a4
Chromosome 19CM039029.1n/an/a0
Chromosome 20CM039030.1n/an/a0
Chromosome 21CM039031.1n/an/a0
Chromosome 22CM039032.1n/an/a0
Chromosome XCM039033.1n/an/a0
unplacedn/an/an/a286

Assembly statistics

MoleculeSequence RoleTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
AllAssembled molecule3,061,735,0123553,060,224,934154,412,5601090
Chromosome 1AllAssembled moleculeUnlocalized scaffolds254,495,492251,946,5362,548,956615254,493,479251,944,5232,548,956251,946,536251,946,536642,59612120000
Chromosome 2Assembled molecule241,746,9061241,745,506241,746,90660
Chromosome 3AllAssembled moleculeUnlocalized scaffolds201,686,178199,578,7652,107,413514201,685,978199,578,5652,107,413199,578,765199,578,765578,592110000
Chromosome 4Assembled molecule191,279,2091191,258,432191,279,20930
Chromosome 5Assembled molecule183,032,1131183,031,225183,032,11350
Chromosome 6AllAssembled moleculeUnlocalized scaffolds176,659,059171,862,1644,796,89516115176,603,510171,806,6154,796,895171,862,164171,862,164510,649330000
Chromosome 7Assembled molecule162,676,7101162,676,058162,676,71050
Chromosome 8Assembled molecule146,162,1791146,016,392146,162,17960
Chromosome 9AllAssembled moleculeUnlocalized scaffolds144,321,853141,979,6762,342,177514144,320,553141,978,3762,342,177141,979,676141,979,676660,975550000
Chromosome 10Assembled molecule135,528,9731135,497,171135,528,97350
Chromosome 11Assembled molecule135,195,8011135,195,801135,195,80100
Chromosome 12Assembled molecule133,364,6681133,364,668133,364,66800
Chromosome 13AllAssembled moleculeUnlocalized scaffolds101,444,829100,338,6681,106,161817101,361,269100,255,1081,106,161100,338,668100,338,668324,900440000
Chromosome 14AllAssembled moleculeUnlocalized scaffolds98,577,79898,523,32654,47221198,576,91298,522,44054,47298,523,32698,523,32654,472550000
Chromosome 15Assembled molecule92,495,150192,494,93792,495,15020
Chromosome 16Assembled molecule90,263,977190,191,01190,263,97780
Chromosome 17AllAssembled moleculeUnlocalized scaffolds84,451,93082,660,9871,790,94371684,451,43082,660,4871,790,94382,660,98782,660,987423,963330000
Chromosome 18AllAssembled moleculeUnlocalized scaffolds79,934,87078,244,8561,690,01451479,932,54378,242,5291,690,01478,244,85678,244,856635,858220000
Chromosome 19Assembled molecule61,306,886161,266,54061,306,88640
Chromosome 20Assembled molecule66,061,391166,061,19166,061,39110
Chromosome 21Assembled molecule38,859,244138,758,28838,859,24460
Chromosome 22Assembled molecule43,165,484143,104,43343,165,48430
Chromosome XAssembled molecule154,412,5601154,286,794154,412,56070
unplacedAssembled molecule44,611,75228643,850,813645,346130
Support Center