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ASM2283312v2

Organism name:
Homo sapiens (human)
BioSample:
SAMN02981219
BioProject:
PRJNA1431
Submitter:
Celera Genomics
Date:
2005/09/08
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_022833125.2 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
AADB02

IDs: 12518971 [UID] 32756518 [GenBank]

See Genome Information for Homo sapiens

There are 1082 assemblies for this organism

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History (Show revision history)

Comment

This is the November 2001 combined whole genome shotgun assembly applied to the 27 million reads of Celera's whole genome shotgun data and 16 million reads of shredded GenBank data from other human genome projects (Nature 2001. 409:860-921). It ... relied on Celera's paired reads and BAC end reads from TIGR for long range order and orientation. Its scaffolds were mapped to chromosomes using STS maps. For more detailed information about whole genome sequencing and Celera's assembly process, please refer to Venter, J.C. et al. Science 2001. 291:1304-1351.  more

Global statistics

Total sequence length3,147,488,104
Total ungapped length3,087,304,100
Gaps between scaffolds700
Number of scaffolds378,343
Scaffold N5031,321,926
Scaffold L5030
Number of contigs401,931
Contig N50608,771
Contig L501,149
Total number of chromosomes and plasmids24
Number of component sequences (WGS or clone)401,931

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCA_022833135.2)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM000252.1n/an/a6
Chromosome 2CM000253.1n/an/a6
Chromosome 3CM000254.1n/an/a2
Chromosome 4CM000255.1n/an/a12
Chromosome 5CM000256.1n/an/a2
Chromosome 6CM000257.1n/an/a5
Chromosome 7CM000258.1n/an/a11
Chromosome 8CM000259.1n/an/a2
Chromosome 9CM000260.1n/an/a3
Chromosome 10CM000261.1n/an/a3
Chromosome 11CM000262.1n/an/a1
Chromosome 12CM000263.1n/an/a0
Chromosome 13CM000264.1n/an/a5
Chromosome 14CM000265.1n/an/a1
Chromosome 15CM000266.1n/an/a4
Chromosome 16CM000267.1n/an/a6
Chromosome 17CM000268.1n/an/a3
Chromosome 18CM000269.1n/an/a2
Chromosome 19CM000270.1n/an/a0
Chromosome 20CM000271.1n/an/a0
Chromosome 21CM000272.1n/an/a0
Chromosome 22CM000273.1n/an/a1
Chromosome XCM000274.1n/an/a1
Chromosome YCM000275.1n/an/a2
unplacedn/an/an/a377,541

Assembly statistics

MoleculeSequence RoleTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
AllAssembled molecule3,147,488,104378,3433,087,304,10031,321,92623,588700
Chromosome 1AllAssembled moleculeUnlocalized scaffolds222,416,206222,388,98727,21973676217,494,882217,467,66327,21920,146,33520,146,33513,9021,3071,307066660
Chromosome 2AllAssembled moleculeUnlocalized scaffolds236,936,593236,827,137109,45665596232,451,617232,342,161109,45663,105,98163,105,98171,7541,6431,643058580
Chromosome 3AllAssembled moleculeUnlocalized scaffolds196,596,659196,588,7667,89326242194,036,882194,028,9897,893101,945,515101,945,5156,5182,8162,816023230
Chromosome 4AllAssembled moleculeUnlocalized scaffolds189,897,480189,777,617119,863635112185,922,880185,818,450104,43066,459,54266,459,54222,5942,2662,262450500
Chromosome 5AllAssembled moleculeUnlocalized scaffolds176,346,526176,344,3262,20033312173,321,151173,318,9512,20026,804,07826,804,0781,1001,6381,638030300
Chromosome 6AllAssembled moleculeUnlocalized scaffolds172,090,855171,718,000372,85538335169,697,783169,349,796347,987103,786,604103,786,604364,3773913652632320
Chromosome 7AllAssembled moleculeUnlocalized scaffolds153,941,600153,561,227380,373665511150,147,718149,810,828336,89037,175,74437,175,744309,4646125902254540
Chromosome 8AllAssembled moleculeUnlocalized scaffolds142,546,634142,535,10911,52523212140,210,492140,198,96711,52539,695,60539,695,60510,4441,4771,477020200
Chromosome 9AllAssembled moleculeUnlocalized scaffolds111,635,827111,583,15452,67352493108,490,180108,445,01045,17025,897,79825,897,79828,399407403448480
Chromosome 10AllAssembled moleculeUnlocalized scaffolds129,198,287129,189,6148,67333303127,161,699127,153,0268,67338,429,48538,429,4855,962482482029290
Chromosome 11AllAssembled moleculeUnlocalized scaffolds132,182,155132,164,24817,90726251129,784,782129,766,87517,90744,976,37044,976,37017,9071,0331,033024240
Chromosome 12Assembled molecule133,516,80022131,383,28279,994,7911,43121
Chromosome 13AllAssembled moleculeUnlocalized scaffolds95,863,23495,789,53273,702138595,307,16295,233,46073,70228,042,73328,042,73322,9331331330770
Chromosome 14AllAssembled moleculeUnlocalized scaffolds87,319,43487,316,7252,70965186,944,03486,941,3252,70953,999,51353,999,5132,7091281280440
Chromosome 15AllAssembled moleculeUnlocalized scaffolds78,932,26278,891,13341,1293834476,409,50876,373,75735,75117,317,63317,317,63313,254803802133330
Chromosome 16AllAssembled moleculeUnlocalized scaffolds75,290,32675,226,90963,4176155671,327,27471,264,01663,25814,690,83414,690,83417,099848846254540
Chromosome 17AllAssembled moleculeUnlocalized scaffolds77,828,61477,819,2639,3513633374,758,05774,748,7069,35115,264,11415,264,1145,3091,1711,171032320
Chromosome 18AllAssembled moleculeUnlocalized scaffolds74,795,08774,792,8812,2062018273,367,61773,365,4112,20620,447,29420,447,2941,106779779017170
Chromosome 19Assembled molecule56,142,8111454,973,23110,109,11930213
Chromosome 20Assembled molecule59,605,541559,234,52833,108,650744
Chromosome 21Assembled molecule33,216,610432,992,20632,701,733583
Chromosome 22AllAssembled moleculeUnlocalized scaffolds35,082,73335,075,0817,6522524133,475,08833,467,4367,65220,974,06120,974,0617,652174174023230
Chromosome XAllAssembled moleculeUnlocalized scaffolds155,408,639155,407,0501,58935341151,309,258151,307,6691,58913,135,42413,135,4241,5892,6282,628033330
Chromosome YAllAssembled moleculeUnlocalized scaffolds11,135,60311,133,0972,506252329,565,0459,562,5392,5061,599,6161,599,6161,4067272022220
unplacedAssembled molecule309,561,588377,541307,537,7447669150
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