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AstMex3_Tinaja

Organism name:
Astyanax mexicanus (Mexican tetra)
Infraspecific name:
Ecotype: Tinaja cave
Isolate:
ESR-SI-003
Sex:
female
BioSample:
SAMN26927012
BioProject:
PRJNA819394
Submitter:
University of Missouri
Date:
2022/05/19
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_023375835.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
JALGOS01
Assembly method:
hifiasm v. 0.13
Expected final version:
yes
Genome coverage:
27.0x
Sequencing technology:
PacBio Sequel II

IDs: 12792391 [UID] 33421098 [GenBank]

See Genome Information for Astyanax mexicanus

There are 6 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length1,410,308,222
Total ungapped length1,410,281,222
Gaps between scaffolds0
Number of scaffolds238
Scaffold N5051,036,050
Scaffold L5011
Number of contigs292
Contig N5026,106,996
Contig L5019
Total number of chromosomes and plasmids25
Number of component sequences (WGS or clone)238

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCA_023375865.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM041852.1n/an/a0
Chromosome 2CM041853.1n/an/a0
Chromosome 3CM041854.1n/an/a0
Chromosome 4CM041855.1n/an/a0
Chromosome 5CM041856.1n/an/a0
Chromosome 6CM041857.1n/an/a0
Chromosome 7CM041858.1n/an/a0
Chromosome 8CM041859.1n/an/a0
Chromosome 9CM041860.1n/an/a0
Chromosome 10CM041861.1n/an/a0
Chromosome 11CM041862.1n/an/a0
Chromosome 12CM041863.1n/an/a0
Chromosome 13CM041864.1n/an/a0
Chromosome 14CM041865.1n/an/a0
Chromosome 15CM041866.1n/an/a0
Chromosome 16CM041867.1n/an/a0
Chromosome 17CM041868.1n/an/a0
Chromosome 18CM041869.1n/an/a0
Chromosome 19CM041870.1n/an/a0
Chromosome 20CM041871.1n/an/a0
Chromosome 21CM041872.1n/an/a0
Chromosome 22CM041873.1n/an/a0
Chromosome 23CM041874.1n/an/a0
Chromosome 24CM041875.1n/an/a0
Chromosome 25CM041876.1n/an/a0
unplacedn/an/an/a213

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
All1,410,308,2222381,410,281,22251,036,050540
Chromosome 1130,591,7931130,589,793130,591,79340
Chromosome 284,676,994184,674,49484,676,99450
Chromosome 365,833,851165,833,35165,833,85110
Chromosome 470,139,363170,136,36370,139,36360
Chromosome 559,648,305159,647,80559,648,30510
Chromosome 655,564,349155,562,84955,564,34930
Chromosome 757,203,833157,202,83357,203,83320
Chromosome 853,872,887153,871,88753,872,88720
Chromosome 953,896,261153,896,26153,896,26100
Chromosome 1053,015,284153,015,28453,015,28400
Chromosome 1149,298,640149,297,14049,298,64030
Chromosome 1244,153,773144,153,27344,153,77310
Chromosome 1351,036,050151,034,05051,036,05040
Chromosome 1450,453,748150,452,74850,453,74820
Chromosome 1546,722,781146,722,28146,722,78110
Chromosome 1645,015,178145,014,67845,015,17810
Chromosome 1747,325,428147,325,42847,325,42800
Chromosome 1846,432,170146,431,67046,432,17010
Chromosome 1945,566,253145,565,25345,566,25320
Chromosome 2040,707,119140,706,61940,707,11910
Chromosome 2142,110,506142,108,50642,110,50640
Chromosome 2241,019,573141,019,07341,019,57310
Chromosome 2336,878,404136,878,40436,878,40400
Chromosome 2433,256,296133,256,29633,256,29600
Chromosome 2526,885,770126,885,27026,885,77010
unplaced79,003,61321378,999,6131,275,32180