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AstMex3_Molino

Organism name:
Astyanax mexicanus (Mexican tetra)
Infraspecific name:
Ecotype: Molino cave
Isolate:
ESR-SI-002
Sex:
female
BioSample:
SAMN26927110
BioProject:
PRJNA819399
Submitter:
University of Missouri
Date:
2022/05/19
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_023375845.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
JALGOT01
Assembly method:
hifiasm v. 0.13
Expected final version:
yes
Genome coverage:
33.0x
Sequencing technology:
PacBio Sequel II

IDs: 12792381 [UID] 33421088 [GenBank]

See Genome Information for Astyanax mexicanus

There are 6 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length1,361,196,561
Total ungapped length1,361,124,561
Gaps between scaffolds0
Number of scaffolds108
Scaffold N5047,699,602
Scaffold L5011
Number of contigs252
Contig N5011,530,375
Contig L5037
Total number of chromosomes and plasmids25
Number of component sequences (WGS or clone)108

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCA_023375855.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM041827.1n/an/a0
Chromosome 2CM041828.1n/an/a0
Chromosome 3CM041829.1n/an/a0
Chromosome 4CM041830.1n/an/a0
Chromosome 5CM041831.1n/an/a0
Chromosome 6CM041832.1n/an/a0
Chromosome 7CM041833.1n/an/a0
Chromosome 8CM041834.1n/an/a0
Chromosome 9CM041835.1n/an/a0
Chromosome 10CM041836.1n/an/a0
Chromosome 11CM041837.1n/an/a0
Chromosome 12CM041838.1n/an/a0
Chromosome 13CM041839.1n/an/a0
Chromosome 14CM041840.1n/an/a0
Chromosome 15CM041841.1n/an/a0
Chromosome 16CM041842.1n/an/a0
Chromosome 17CM041843.1n/an/a0
Chromosome 18CM041844.1n/an/a0
Chromosome 19CM041845.1n/an/a0
Chromosome 20CM041846.1n/an/a0
Chromosome 21CM041847.1n/an/a0
Chromosome 22CM041848.1n/an/a0
Chromosome 23CM041849.1n/an/a0
Chromosome 24CM041850.1n/an/a0
Chromosome 25CM041851.1n/an/a0
unplacedn/an/an/a83

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
All1,361,196,5611081,361,124,56147,699,6021440
Chromosome 1122,908,6691122,898,669122,908,669200
Chromosome 278,901,647178,897,14778,901,64790
Chromosome 362,235,033162,231,03362,235,03380
Chromosome 440,578,180140,574,68040,578,18070
Chromosome 559,920,421159,918,42159,920,42140
Chromosome 656,049,960156,046,96056,049,96060
Chromosome 755,567,272155,565,77255,567,27230
Chromosome 858,094,893158,093,39358,094,89330
Chromosome 953,772,830153,770,83053,772,83040
Chromosome 1046,338,077146,334,07746,338,07780
Chromosome 1151,150,575151,149,07551,150,57530
Chromosome 1247,699,602147,696,60247,699,60260
Chromosome 1343,817,144143,814,14443,817,14460
Chromosome 1447,699,856147,699,35647,699,85610
Chromosome 1545,879,371145,877,37145,879,37140
Chromosome 1643,846,600143,845,60043,846,60020
Chromosome 1744,256,709144,253,70944,256,70960
Chromosome 1845,105,575145,100,07545,105,575110
Chromosome 1943,196,457143,194,95743,196,45730
Chromosome 2040,929,474140,927,47440,929,47440
Chromosome 2138,660,421138,658,42138,660,42140
Chromosome 2238,905,776138,904,27638,905,77630
Chromosome 2334,504,834134,504,83434,504,83400
Chromosome 2433,038,252133,035,25233,038,25260
Chromosome 2526,742,272126,741,77226,742,27210
unplaced101,396,66183101,390,6612,067,607120