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ASM2433408v1

Organism name:: Lutzomyia longipalpis (flies)
Isolate:: SR_M1_2022
Sex:: male
BioSample:: SAMN29048364
BioProject:: PRJNA849274
Submitter:: Baylor College of Medicine
Date:: 2022/07/20
Assembly level:: Chromosome
Genome representation:: full
RefSeq category:: representative genome
GenBank assembly accession:: GCA_024334085.1 (latest)
RefSeq assembly accession:: GCF_024334085.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
Assembly method:: ipa2-task 1.5.0 HiC Juicer analysis by BCM DNA Zoo Aiden Lab v. ipa2-task 1.5.0 (commit c875fce13bdacbafc2f4f750c6438f4453e1354 ran Feb 2022, Juicer ran May 2022; HiC Juicer assembly by BCM DNA Zoo Aiden Lab v. May 2022
Expected final version:: yes
Genome coverage:: 53.0x
Sequencing technology:: PacBio HiFi; Illumina HiC

IDs: 13317941 [UID] 34776608 [GenBank] 42339678 [RefSeq]

See Genome Information for Lutzomyia longipalpis

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_024334085.1	=	GCF_024334085.1	ASM2433408v1	Chromosome	Latest GenBank, Latest RefSeq

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI RefSeq
Annotation Status::Full annotation
Annotation Name::GCF_024334085.1-RS_2023_05
Annotation Pipeline::NCBI eukaryotic genome annotation pipeline
Annotation Software Version::10.1
URL Organism::Lutzomyia_longipalpis
Annotation Method::Gnomon; cmsearch; tRNAscan-SE
Features Annotated::Gene; mRNA; CDS; ncRNA
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	147,838,017
Total ungapped length	147,716,810
Gaps between scaffolds	0
Number of scaffolds	4
Scaffold N50	40,620,313
Scaffold L50	2
Number of contigs	255
Contig N50	1,092,454
Contig L50	45
Total number of chromosomes and plasmids	4
Number of component sequences (WGS or clone)	4

Molecule name	GenBank sequence		RefSeq sequence
Chromosome 1	CP101402.1	=	NC_074707.1
Chromosome 2	CP101403.1	=	NC_074708.1
Chromosome 3	CP101404.1	=	NC_074709.1
Chromosome 4	CP101405.1	=	NC_074710.1

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	147,838,017	4	147,716,810	40,620,313	251
Chromosome 1	51,077,213	1	51,043,190	51,077,213	69
Chromosome 2	40,620,313	1	40,577,698	40,620,313	90
Chromosome 3	31,137,733	1	31,113,710	31,137,733	49
Chromosome 4	25,002,758	1	24,982,212	25,002,758	43

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ASM2433408v1

See Genome Information for Lutzomyia longipalpis

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

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