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ASM2474221v1

Organism name:
Staphylococcus epidermidis (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: UMB7543
BioSample:
SAMN30370630
BioProject:
PRJNA316969
Submitter:
Loyola University Chicago
Date:
2022/08/23
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_024742215.1 (latest)
RefSeq assembly accession:
GCF_024742215.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JANRMH01
Assembly method:
SPAdes v. 3.15.4
Expected final version:
yes
Genome coverage:
66.75x
Sequencing technology:
Illumina NextSeq

IDs: 13534881 [UID] 35309628 [GenBank] 35321608 [RefSeq]

See Genome Information for Staphylococcus epidermidis

There are 4824 assemblies for this organism

See more

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/
Bacteria and source DNA available from Alan J. Wolfe

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::08/18/2022 08:06:05
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.2
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::2,442
CDSs (total)::2,374
Genes (coding)::2,296
CDSs (with protein)::2,296
Genes (RNA)::68
rRNAs::6, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
partial rRNAs::5 (5S)
tRNAs::56
ncRNAs::4
Pseudo Genes (total)::78
CDSs (without protein)::78
Pseudo Genes (ambiguous residues)::0 of 78
Pseudo Genes (frameshifted)::45 of 78
Pseudo Genes (incomplete)::42 of 78
Pseudo Genes (internal stop)::24 of 78
Pseudo Genes (multiple problems)::26 of 78
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,527,127
Total ungapped length2,527,127
Number of contigs57
Contig N5098,169
Contig L5010
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)57

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,527,127572,527,12798,16900

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Staphylococcus epidermidisStaphylococcus epidermidis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_002087975.1Staphylococcus epidermidistype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_002087975.1Staphylococcus epidermidistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.4491.5894.25
Best-match type99.4491.5894.25

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna