U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



NCSU_EF33YS_1

Organism name:
Enterococcus faecalis (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: NC_LB-4790
BioSample:
SAMN28608656
BioProject:
PRJNA293225
Submitter:
US Food and Drug Administration
Date:
2022/10/12
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_025666645.1 (latest)
RefSeq assembly accession:
GCF_025666645.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JAOBXO01
Assembly method:
CLC De Novo Assembly v. 22.0.1
Expected final version:
yes
Genome coverage:
178.9x
Sequencing technology:
Illumina MiSeq

IDs: 14106551 [UID] 36642178 [GenBank] 36708908 [RefSeq]

See Genome Information for Enterococcus faecalis

There are 8807 assemblies for this organism

See more

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::09/13/2022 16:51:19
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.2
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::2,842
CDSs (total)::2,782
Genes (coding)::2,746
CDSs (with protein)::2,746
Genes (RNA)::60
rRNAs::2, 1, 4 (5S, 16S, 23S)
complete rRNAs::2, 1, 1 (5S, 16S, 23S)
partial rRNAs::3 (23S)
tRNAs::49
ncRNAs::4
Pseudo Genes (total)::36
CDSs (without protein)::36
Pseudo Genes (ambiguous residues)::0 of 36
Pseudo Genes (frameshifted)::12 of 36
Pseudo Genes (incomplete)::14 of 36
Pseudo Genes (internal stop)::15 of 36
Pseudo Genes (multiple problems)::5 of 36
CRISPR Arrays::3
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,963,559
Total ungapped length2,963,559
Number of contigs91
Contig N501,499,542
Contig L501
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)91

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,963,559912,963,5591,499,54200

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Enterococcus faecalisEnterococcus faecalis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_022869705.1Enterococcus faecalistype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_022869705.1Enterococcus faecalistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.0083.8486.66
Best-match type99.0083.8486.66

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna