U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



ASM2641368v1

Organism name:
Candidatus Micrarchaeota archaeon (archaea)
Taxonomy check:
Inconclusive
Isolate:
SKW51
BioSample:
SAMN30305273
BioProject:
PRJEB4990
Submitter:
Universiti Teknologi Malaysia - Malaysia
Date:
2022/11/27
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Excluded from RefSeq:
  • derived from metagenome
  • genus undefined
GenBank assembly accession:
GCA_026413685.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
JAOAKK01
Assembly method:
SPAdes v. 3.13.0
Expected final version:
no
Genome coverage:
11.1752x
Sequencing technology:
Illumina NovaSeq

IDs: 14532881 [UID] 37697698 [GenBank]

See Genome Information for Candidatus Micrarchaeota archaeon

There are 962 assemblies for this organism

See more

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::09/07/2022 19:10:03
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.2
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::665
CDSs (total)::638
Genes (coding)::636
CDSs (with protein)::636
Genes (RNA)::27
rRNAs::1 (5S)
complete rRNAs::1 (5S)
tRNAs::24
ncRNAs::2
Pseudo Genes (total)::2
CDSs (without protein)::2
Pseudo Genes (ambiguous residues)::0 of 2
Pseudo Genes (frameshifted)::0 of 2
Pseudo Genes (incomplete)::1 of 2
Pseudo Genes (internal stop)::1 of 2
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length609,022
Total ungapped length608,992
Gaps between scaffolds0
Number of scaffolds49
Scaffold N5017,913
Scaffold L5010
Number of contigs52
Contig N5017,913
Contig L5010
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)49

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced609,02249608,99217,91330

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Candidatus Micrarchaeota archaeonCandidatus Micrarchaeota archaeon

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
none-foundnana

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match typena0.000.00

ANI result

Taxonomy check statusBest match statusComment
Inconclusivenana