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ASM3014496v1

Organism name:
Nitrospira sp. BO4 (bacteria)
Taxonomy check:
Inconclusive
Isolate:
BO4
BioSample:
SAMN28488410
BioProject:
PRJNA838966
Submitter:
Miami University
Date:
2023/06/02
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Excluded from RefSeq:
  • derived from metagenome
GenBank assembly accession:
GCA_030144965.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
JAMPUU01
Assembly method:
MetaSPAdes v. 3.13.0
Expected final version:
yes
Genome coverage:
10.0x
Sequencing technology:
Illumina

IDs: 16736221 [UID] 43034038 [GenBank]

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/
Bacteria and source DNA available from Annette Bollmann

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::06/04/2022 13:38:58
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.1
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::4,502
CDSs (total)::4,453
Genes (coding)::4,420
CDSs (with protein)::4,420
Genes (RNA)::49
rRNAs::1 (5S)
complete rRNAs::1 (5S)
tRNAs::46
ncRNAs::2
Pseudo Genes (total)::33
CDSs (without protein)::33
Pseudo Genes (ambiguous residues)::0 of 33
Pseudo Genes (frameshifted)::4 of 33
Pseudo Genes (incomplete)::30 of 33
Pseudo Genes (internal stop)::3 of 33
Pseudo Genes (multiple problems)::4 of 33
##Genome-Annotation-Data-END##

Global statistics

Total sequence length4,705,959
Total ungapped length4,705,859
Gaps between scaffolds0
Number of scaffolds30
Scaffold N50312,936
Scaffold L505
Number of contigs31
Contig N50312,936
Contig L505
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)30

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced4,705,959304,705,859312,93610

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Nitrospira sp. BO4Nitrospira sp. BO4

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001273775.1Nitrospira moscoviensistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type80.441.881.93

ANI result

Taxonomy check statusBest match statusComment
Inconclusivelow-coveragena